Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_N13
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-8|AAN84853.1| 400|Caenorhabditis elegans Oxysterol bin... 28 3.2
AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol bin... 28 3.2
Z35639-2|CAA84694.1| 351|Caenorhabditis elegans Hypothetical pr... 27 5.5
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 5.5
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 27 7.3
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 27 7.3
Z93395-5|CAE18034.1| 519|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z83112-6|CAE17883.1| 519|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z72507-4|CAA96626.1| 175|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr... 26 9.7
AF101318-11|ABA00165.1| 67|Caenorhabditis elegans Hypothetical... 26 9.7
>AF000195-8|AAN84853.1| 400|Caenorhabditis elegans Oxysterol
binding protein (osbp)related protein 4, isoform b
protein.
Length = 400
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = -3
Query: 121 VVCELSSSELD---LTVPLLGGKVHRIFGS-CR 35
V CE + D LT P GGK HRI GS CR
Sbjct: 244 VECEKTGYRADIEFLTKPFFGGKPHRIQGSICR 276
>AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol
binding protein (osbp)related protein 4, isoform a
protein.
Length = 676
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = -3
Query: 121 VVCELSSSELD---LTVPLLGGKVHRIFGS-CR 35
V CE + D LT P GGK HRI GS CR
Sbjct: 520 VECEKTGYRADIEFLTKPFFGGKPHRIQGSICR 552
>Z35639-2|CAA84694.1| 351|Caenorhabditis elegans Hypothetical
protein D2045.5 protein.
Length = 351
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 253 DTRPGRQWXGVHWSDARNAFVL 188
D +PG GVH SDA+N +++
Sbjct: 138 DIKPGNCVTGVHGSDAKNVYLI 159
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 287 FTICSCISEGNRHTSWTSMXRS 222
F I C G HT WT RS
Sbjct: 4931 FIIICCFENGTSHTEWTGTLRS 4952
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 26.6 bits (56), Expect = 7.3
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +1
Query: 118 QRHESSKGAPHNDRVRSSSPTAARVRMRSLH--LTNGLLXIDV----QDVCRLPSDMQLH 279
+ +++S GAP + S+S + V SL L N +D +D R P+ L
Sbjct: 33 RNNKTSAGAPPTSELSSASSPSINVPRFSLSNALPNSARTVDSGISNEDETRPPTTASLP 92
Query: 280 IVKSYQPSLTSKKKHACRSTLQDHGHS 360
+ + S + + S ++HGHS
Sbjct: 93 MDQPSLSSSPENRLNPAPSVAEEHGHS 119
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 26.6 bits (56), Expect = 7.3
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +1
Query: 118 QRHESSKGAPHNDRVRSSSPTAARVRMRSLH--LTNGLLXIDV----QDVCRLPSDMQLH 279
+ +++S GAP + S+S + V SL L N +D +D R P+ L
Sbjct: 33 RNNKTSAGAPPTSELSSASSPSINVPRFSLSNALPNSARTVDSGISNEDETRPPTTASLP 92
Query: 280 IVKSYQPSLTSKKKHACRSTLQDHGHS 360
+ + S + + S ++HGHS
Sbjct: 93 MDQPSLSSSPENRLNPAPSVAEEHGHS 119
>Z93395-5|CAE18034.1| 519|Caenorhabditis elegans Hypothetical
protein ZC101.3 protein.
Length = 519
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = -3
Query: 316 FYLSGLVDKILQYAVAYQRAIDTRPGRQ--WXGVHWSDARNAFVLLLQLAMKTLLYH 152
FY L I+ Y ++R + R RQ W WS R AF L A LYH
Sbjct: 227 FYQPYLFSLIVLYP-DFERQLRERKTRQRNWLDCAWSGVRIAFWWWLMEASLHFLYH 282
>Z83112-6|CAE17883.1| 519|Caenorhabditis elegans Hypothetical
protein ZC101.3 protein.
Length = 519
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = -3
Query: 316 FYLSGLVDKILQYAVAYQRAIDTRPGRQ--WXGVHWSDARNAFVLLLQLAMKTLLYH 152
FY L I+ Y ++R + R RQ W WS R AF L A LYH
Sbjct: 227 FYQPYLFSLIVLYP-DFERQLRERKTRQRNWLDCAWSGVRIAFWWWLMEASLHFLYH 282
>Z72507-4|CAA96626.1| 175|Caenorhabditis elegans Hypothetical
protein F17C11.4 protein.
Length = 175
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +1
Query: 268 MQLHIVKSYQPSLTSKKKHAC 330
MQ+H++ S++PS +S+++ C
Sbjct: 138 MQIHLLTSHRPSPSSRRESVC 158
>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical protein
E03G2.2 protein.
Length = 1503
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 319 FFYLSGLVDKILQYAVAYQRAIDTRPGRQWXGVHWSDA 206
+F G+V +L YA+A + GR WSDA
Sbjct: 934 YFKAMGIVTYVLPYAIAVVLNVSFALGRSLWLTAWSDA 971
>AF101318-11|ABA00165.1| 67|Caenorhabditis elegans Hypothetical
protein Y73C8C.12 protein.
Length = 67
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +1
Query: 205 LHLTNGLLXIDVQDVCRLPSDMQLHIVKSYQPSLTSKKKHACRSTLQDH 351
L++ + L DV+D + ++ + ++ + L +K+ H CR ++Q H
Sbjct: 11 LNVASILTAYDVKDFAKFQRNV-IRNMEKLEKLLGNKRPHCCRYSIQSH 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,286,699
Number of Sequences: 27780
Number of extensions: 199332
Number of successful extensions: 485
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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