Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N13
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   10.0 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   10.0 

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 170 HRQLQQEYECVPC 208
           H + Q+EY CV C
Sbjct: 29  HAERQEEYRCVIC 41


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 232 WXGVHWSDARNAFVLLLQLAMKTLL 158
           W GV W+     F  L   A+ T+L
Sbjct: 225 WKGVKWTGKVVYFTSLFPYALLTIL 249


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 232 WXGVHWSDARNAFVLLLQLAMKTLL 158
           W GV W+     F  L   A+ T+L
Sbjct: 278 WKGVKWTGKVVYFTSLFPYALLTIL 302


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   STLGGFGPLTLPARAKDPVHFT 67
           ++ G  GP++L  +A DP++ T
Sbjct: 182 ASTGMGGPVSLVVQAMDPMNTT 203


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +1

Query: 4  HSWGVWSFDFTCTSQRSCAL 63
          H W  + +DF    +R  A+
Sbjct: 36 HEWKYFDYDFGSEERRQAAI 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,396
Number of Sequences: 438
Number of extensions: 2243
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)