Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N13
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56670.1 68414.m06517 GDSL-motif lipase/hydrolase family prot...    29   1.3  
At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            27   4.0  
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    27   4.0  
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            27   4.0  
At5g03100.1 68418.m00258 F-box family protein contains F-box dom...    27   6.9  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    27   6.9  
At5g20240.1 68418.m02409 floral homeotic protein PISTILLATA (PI)...    26   9.1  
At3g19650.1 68416.m02490 cyclin-related contains weak similarity...    26   9.1  

>At1g56670.1 68414.m06517 GDSL-motif lipase/hydrolase family protein
           similarity to early early nodulin ENOD8 [Medicago
           sativa] GI:304037, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284, elicitor-induced
           glycoprotein iEP4 [Daucus carota] GI:1911765; contains
           InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
           family
          Length = 373

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 232 WXGVHWSDARNAFVLLLQLAMKTLLYHYVEP 140
           W G+H+++  NA V     AMK L  HY +P
Sbjct: 338 WDGIHYTETANAIV-----AMKVLSMHYSKP 363


>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 63 KCTGSLARAGKVKGPNP 13
          K  GSLARAGKV+G  P
Sbjct: 3  KVHGSLARAGKVRGQTP 19


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
          RIBOSOMAL PROTEIN S30 - Arabidopsis
          thaliana,PID:e1358183
          Length = 62

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 63 KCTGSLARAGKVKGPNP 13
          K  GSLARAGKV+G  P
Sbjct: 3  KVHGSLARAGKVRGQTP 19


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 63 KCTGSLARAGKVKGPNP 13
          K  GSLARAGKV+G  P
Sbjct: 3  KVHGSLARAGKVRGQTP 19


>At5g03100.1 68418.m00258 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 307

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -2

Query: 320 FFLLVRLG**DFTICSCISEGNRHTSWTSMXRSPLVRCKERIRTLAAVGD-----EDLTL 156
           FF+   L     T+  CI       SW+S+    L RCK    ++A +       E LTL
Sbjct: 120 FFINSSLKQLSLTLVYCILNPKCVVSWSSLRNLSLNRCKVSDDSIAKILTGCSLLESLTL 179

Query: 155 SLC 147
           +LC
Sbjct: 180 NLC 182


>At3g57300.1 68416.m06378 transcriptional activator, putative similar
            to transcriptional activator SRCAP [Homo sapiens]
            GI:5106572; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1507

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 127  HVVVCELSSSELDLTVPLLGGKVHRIFGSCR*SQRTKPPK 8
            H ++ E+ S EL +  P L    HRIFGSC   Q   P K
Sbjct: 1163 HPLIQEIDS-ELPVVQPALQ-LTHRIFGSCPPMQSFDPAK 1200


>At5g20240.1 68418.m02409 floral homeotic protein PISTILLATA (PI)
           contains Pfam profiles PF01486: K-box region and
           PF00319: SRF-type transcription factor (DNA-binding and
           dimerisation domain)
          Length = 208

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 402 GYRARPIRPFTQETAMTMIL 343
           GYR +PI+P  QE  M++++
Sbjct: 188 GYRVQPIQPNLQEKIMSLVI 207


>At3g19650.1 68416.m02490 cyclin-related contains weak similarity to
           Cylicin I (Multiple-band polypeptide I)
           (Swiss-Prot:P35662) [Bos taurus]
          Length = 302

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 106 RAHRQRHESSKGAPHNDRVRSSSPTAARVRMRS 204
           + H   HE++K APH  +V  S P +     RS
Sbjct: 79  KKHSGHHETTKAAPHLSQVPRSRPYSQHDDRRS 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,756,508
Number of Sequences: 28952
Number of extensions: 190239
Number of successful extensions: 527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)