Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N11
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   2.8  
SPCC576.12c |||DUF2008 family protein|Schizosaccharomyces pombe|...    26   3.7  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   6.5  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   8.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   8.6  

>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 128 KTRNKAFG-IHSPISEDKQRILRVKSKNAFMATAKDICSQITKLRDFLL---EHRDKYL 292
           K  NK  G +   I +  QR+  +   ++  A    +  Q TKLRDF L   E R +Y+
Sbjct: 18  KIYNKGNGSVQQTILQASQRLNELTGYSSIEALKNAVVKQETKLRDFRLSAAEARKRYI 76


>SPCC576.12c |||DUF2008 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 89

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 371 MNTCSHLLKEFXNDNRRTTVTPQTXEYMDSXVDLIDAYLKAVCKVHSELK 520
           +NT + +L  + +  + T +TP   E +   + +     +AVC+ + E K
Sbjct: 10  LNTLARILTLYFSSEKGTKITPSALELITQYLRIYSK--EAVCRAYEEKK 57


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 194 VKSKNAFMATAKDICSQITKLRDFLLEHRD 283
           + SKN   + ++++  QI+KL D L E+R+
Sbjct: 534 INSKNVQQSRSEELEQQISKLTDNLQEYRN 563


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 482 YLKAVCKV-HSELKAMXVKRALHMXKLSXLELPATKSS 592
           YL   C + H++LK   V   +    L  +E PAT SS
Sbjct: 203 YLHRECGIIHTDLKPENVLICIDQDALQHIEAPATTSS 240


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 218 ATAKDICSQITKLRDFLLEHRDKYLSFF---NNVTGDDMSDEERDQIDTGAQRIMN 376
           +T +DICS     +DF +E+   + S      N++     D   D +    Q +MN
Sbjct: 562 STDEDICSTNFIQQDFTMEYNHDFFSSSKTPTNISEQSNPDSNYDTLSLAHQVLMN 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,101
Number of Sequences: 5004
Number of extensions: 38312
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)