Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N11
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0950 - 9428506-9428693,9429223-9429595,9430127-9430572,943...    28   6.7  
03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092...    27   8.9  

>08_01_0950 -
           9428506-9428693,9429223-9429595,9430127-9430572,
           9430654-9430785,9431129-9431236,9431428-9431533
          Length = 450

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +2

Query: 173 DKQRILRVKSKNAFMATAKDICSQITKLRDFLLEHRDKYLSFFNNVTGDDMS-DEERDQI 349
           D +++ ++K+  +  A +++  S  T   + L E  +K+L   +++  DD+S D   D +
Sbjct: 378 DAEKVYKIKANASTAAKSEETYSMSTNCVEKLAEDIEKFLRIRSDLDLDDVSIDHIMDLL 437

Query: 350 DTGAQRIM 373
           D  +  +M
Sbjct: 438 DPSSCTLM 445


>03_03_0021 +
           13808274-13808384,13809036-13809200,13809249-13809278,
           13809279-13809397,13809696-13809770,13812071-13812146,
           13813224-13813289,13813364-13813462,13814072-13814174,
           13814338-13814411
          Length = 305

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +2

Query: 176 KQRILRVKSKNAFMATAKDICSQITKLRDF---LLEHRDKYLSFFNNVT---GDDMSDEE 337
           K+ I  V+  N  +   K   +   K R     L+E+R + L    N+    G+D  DEE
Sbjct: 230 KRYITEVRFLNIMITLLKVFVANPNKPRSIIEALIENRRELLKLLQNLPTSKGEDELDEE 289

Query: 338 RDQIDTGAQRI 370
           R+ I  G Q++
Sbjct: 290 RNLIIQGIQKL 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,529,881
Number of Sequences: 37544
Number of extensions: 209592
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)