Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N11
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26244| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.026
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   31   0.56 
SB_37080| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  

>SB_26244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 323 MSDEERDQIDTGAQRIMNTCSHLLKEFXNDNRRTTVTPQTXE 448
           M+D ERDQID  AQ  M TC + +K   N+   +   P   E
Sbjct: 1   MTDTERDQIDNDAQMYMRTCHNSIKLLKNEESNSENKPLIGE 42


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = +2

Query: 155  HSPISEDKQRILRVKSKNAFMATAKDICSQITKLRDFLLEHRDKYLSFFNNVTGDDMSDE 334
            H+  S    R  R+ S  A ++ A     +  ++RD+L E   + LS+FN+   D +   
Sbjct: 890  HTGSSRPGSRASRLGS--AAISPAAAAAKRKREMRDYLAEEAQELLSYFNHRNVDAIVRV 947

Query: 335  ERDQIDTGAQRIMNTCSH 388
             R  +D+  +RI  + +H
Sbjct: 948  TRATLDSTRRRIAASAAH 965


>SB_37080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 317 DDMSDEERDQIDTGAQRIMNTCSHLLKEFXNDNRRTTVTPQTXEYMDSXVD 469
           D+ S+ E ++   G   I +TC HLLK F   + R   T     Y    +D
Sbjct: 87  DEDSESEEEEESGGGVSIRDTCYHLLKLFCKRSHRLERTLAPATYTPHQLD 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,162
Number of Sequences: 59808
Number of extensions: 276389
Number of successful extensions: 572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)