Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_N11
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 29 3.5
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC006723-3|AAF59427.1| 881|Caenorhabditis elegans Hypothetical ... 29 3.5
AF239999-1|AAF63495.1| 203|Caenorhabditis elegans MDF-2 protein. 27 8.0
AF125953-1|AAD14702.2| 397|Caenorhabditis elegans Temporarily a... 27 8.0
AC084158-31|AAK68576.1| 203|Caenorhabditis elegans Mad (yeast m... 27 8.0
>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
protein C05D12.2 protein.
Length = 1052
Score = 31.1 bits (67), Expect = 0.65
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +2
Query: 248 TKLRDFLLEHRDKYLSFFNNVTGDDMSDEE--RDQIDTGAQRIMNTCSHLLKEFXNDNRR 421
TK++ E+ D +SFFNN+T D D + I Q SH L D+
Sbjct: 153 TKIQKLFTENPDDVISFFNNMTLSDGDDTQPVLTAIQNAQQTYPKMKSHALVLVFTDSTS 212
Query: 422 TTVTPQTXEYMD 457
+ T + + D
Sbjct: 213 SDATAWSHRFTD 224
>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
protein F02E9.4b protein.
Length = 1507
Score = 28.7 bits (61), Expect = 3.5
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Frame = +2
Query: 164 ISEDKQRILRVKSKNAFMATAKDICSQ--ITKLRDFLLEHRDKYLSFF-NNVTG-DDMSD 331
+S D++R +++ A A ++ SQ I+K D +E D S ++V G DD D
Sbjct: 376 LSPDERRARAIEA-GAQAVGAIELGSQEGISKDEDRTIEDEDMDKSKEKDDVDGIDDEDD 434
Query: 332 EERDQIDTGAQRIMNTCSHLLKEFXNDNRR 421
EE D + +M +HL++E D+R+
Sbjct: 435 EESGIEDKNNEEMMEEDNHLIEEIICDDRK 464
>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
protein F02E9.4a protein.
Length = 1505
Score = 28.7 bits (61), Expect = 3.5
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Frame = +2
Query: 164 ISEDKQRILRVKSKNAFMATAKDICSQ--ITKLRDFLLEHRDKYLSFF-NNVTG-DDMSD 331
+S D++R +++ A A ++ SQ I+K D +E D S ++V G DD D
Sbjct: 376 LSPDERRARAIEA-GAQAVGAIELGSQEGISKDEDRTIEDEDMDKSKEKDDVDGIDDEDD 434
Query: 332 EERDQIDTGAQRIMNTCSHLLKEFXNDNRR 421
EE D + +M +HL++E D+R+
Sbjct: 435 EESGIEDKNNEEMMEEDNHLIEEIICDDRK 464
>AC006723-3|AAF59427.1| 881|Caenorhabditis elegans Hypothetical
protein Y19D10B.4 protein.
Length = 881
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = +2
Query: 248 TKLRDFLLEHRDKYLSFFNNVT---GDDMSDEERDQIDTGAQRIMNTCSHLLKEFXNDNR 418
TK++ E+ D +SFFNN+T GDD + I Q +H L D+
Sbjct: 153 TKIQKLFTENPDDVISFFNNMTLFDGDD-TQPVLTAIQNAQQTYPKMQAHALVLVFTDSP 211
Query: 419 RTTVTPQTXEYMDSXVD 469
+ T + + D +
Sbjct: 212 ASDATAWSHRFTDKNAE 228
>AF239999-1|AAF63495.1| 203|Caenorhabditis elegans MDF-2 protein.
Length = 203
Score = 27.5 bits (58), Expect = 8.0
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Frame = +2
Query: 104 LTACIKTVKTRNKA----FGIHSP-ISEDKQRILRVKSKNAFMATAKDICSQITKLRDFL 268
L I VKT+ F IH+ ++E+ + RVK + D+ QIT F
Sbjct: 83 LVMVISEVKTKEVVERWQFDIHTENLAEEGENAHRVKEEKKIRQEISDVIRQITASVSF- 141
Query: 269 LEHRDKYLSFFNNV-TGDDMSDEERDQIDTGAQRIMNTCSHLLKEF 403
L ++ +SF + TG D E D ++GA I N+ + L+ F
Sbjct: 142 LPLLEEPVSFDVLIYTGKDTQAPE-DWTESGACLIQNSETVQLRSF 186
>AF125953-1|AAD14702.2| 397|Caenorhabditis elegans Temporarily
assigned gene nameprotein 304 protein.
Length = 397
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 269 LEHRDKYLSFFNNVTGDDMSDEERDQID 352
+EHRD F + GD+ +EE + ID
Sbjct: 1 MEHRDDDFEFGHQFGGDEEEEEEEEAID 28
>AC084158-31|AAK68576.1| 203|Caenorhabditis elegans Mad (yeast
mitosis arrest deficient)related protein 2, isoform a
protein.
Length = 203
Score = 27.5 bits (58), Expect = 8.0
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Frame = +2
Query: 104 LTACIKTVKTRNKA----FGIHSP-ISEDKQRILRVKSKNAFMATAKDICSQITKLRDFL 268
L I VKT+ F IH+ ++E+ + RVK + D+ QIT F
Sbjct: 83 LVMVISEVKTKEVVERWQFDIHTENLAEEGENAHRVKEEKKIRQEISDVIRQITASVSF- 141
Query: 269 LEHRDKYLSFFNNV-TGDDMSDEERDQIDTGAQRIMNTCSHLLKEF 403
L ++ +SF + TG D E D ++GA I N+ + L+ F
Sbjct: 142 LPLLEEPVSFDVLIYTGKDTQAPE-DWTESGACLIQNSETVQLRSF 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,673,257
Number of Sequences: 27780
Number of extensions: 215450
Number of successful extensions: 508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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