Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N11
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30050.1 68414.m03674 hypothetical protein                          31   0.46 
At2g25660.1 68415.m03075 expressed protein                             28   4.2  
At1g61720.1 68414.m06961 dihydroflavonol 4-reductase (dihydrokae...    28   5.6  
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot...    27   7.4  
At3g22860.1 68416.m02882 eukaryotic translation initiation facto...    27   9.8  
At1g56560.1 68414.m06505 beta-fructofuranosidase, putative / inv...    27   9.8  

>At1g30050.1 68414.m03674 hypothetical protein
          Length = 389

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 38/143 (26%), Positives = 61/143 (42%)
 Frame = +2

Query: 176 KQRILRVKSKNAFMATAKDICSQITKLRDFLLEHRDKYLSFFNNVTGDDMSDEERDQIDT 355
           K  +  +K+  A +A AK+ CSQ+ +    L ++RDK     NN   DD  D  R Q++T
Sbjct: 201 KLLLRELKTVKADLAFAKERCSQLEEENKRLRDNRDK----GNNNPADD--DLIRLQLET 254

Query: 356 GAQRIMNTCSHLLKEFXNDNRRTTVTPQTXEYMDSXVDLIDAYLKAVCKVHSELKAMXVK 535
                    +H    +  +NR      +  +     V  ID  ++ V +V+       + 
Sbjct: 255 LLAE-KARLAHENSIYARENRFLREIVEYHQLTMQDVVYIDEGIEEVAEVNPS-----IT 308

Query: 536 RALHMXKLSXLELPATKSSIPNP 604
           R L M   S  ELP+   S  +P
Sbjct: 309 RTLSMASYSASELPSISPSPSSP 331


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 164  ISEDKQRILRVKSKNAFMATAKDICSQITKLRDFLLEHRDKY 289
            +S      +  +SK+ F+ + +++C Q   LRD L E R  Y
Sbjct: 1336 LSRSTDPAVHSRSKDLFIQSVQNLCLQAENLRDLLEEIRGYY 1377


>At1g61720.1 68414.m06961 dihydroflavonol 4-reductase
           (dihydrokaempferol 4-reductase) family (BAN) similar to
           dihydroflavonol 4-reductase GI:1332411 from [Rosa
           hybrida]
          Length = 340

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -2

Query: 411 SFXNSFSRCEHVFMIRCAPVXXXXXXXXXXXSPVTLLKKLKYLSRCSNKKSLSFVICEQI 232
           SF +SFS CE++F +   P+               +   +  L  C   KS+  VI    
Sbjct: 74  SFESSFSGCEYIFHV-ATPINFKSEDPEKDMIKPAIQGVINVLKSCLKSKSVKRVIYTSS 132

Query: 231 SLAVAM 214
           + AV++
Sbjct: 133 AAAVSI 138


>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
            similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
            nucleotide-exchange protein 2 {Homo sapiens}; contains
            Pfam profile PF01369: Sec7 domain
          Length = 1756

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 95   VISILRGVCLCFKCFFRSITRKFYSFLT 12
            ++ +L G+C      FR   R+FY  LT
Sbjct: 1701 IVKVLEGMCFMNNTIFRKHMREFYPLLT 1728


>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
           subunit 8, putative / eIF3c, putative similar to
           eukaryotic translation initiation factor 3 subunit 8
           (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 155 HSPISEDKQRILRVKSKNAFMATAKDI 235
           H PIS++ QR+L    K AF A  +++
Sbjct: 591 HKPISKNIQRLLEKSEKQAFTAPPENV 617


>At1g56560.1 68414.m06505 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 616

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 290 LSFFNNVTGDDMSDEERDQIDTGAQRIMNTC 382
           L  +  +TGD  S +ER  + TG + IMN C
Sbjct: 263 LRAYGKITGD-FSLQERIDVQTGIKLIMNLC 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,723,167
Number of Sequences: 28952
Number of extensions: 188426
Number of successful extensions: 439
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)