Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M22
         (655 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9BPP9 Cluster: Gag-like protein; n=2; Bombyx mori|Rep:...    38   0.16 
UniRef50_UPI0000D6619F Cluster: PREDICTED: hypothetical protein;...    38   0.28 
UniRef50_UPI0000D55C1F Cluster: PREDICTED: similar to CG2943-PA;...    34   2.6  
UniRef50_Q5A0J5 Cluster: Potential NADH-dependent flavin oxidore...    34   2.6  
UniRef50_Q06WK9 Cluster: Iron-binding surface protein; n=2; Prop...    34   3.4  
UniRef50_A4FQW6 Cluster: Membrane-associated oxidoreductase; n=1...    33   4.5  
UniRef50_Q54P03 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_A7BC27 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_A4FBU1 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_Q9BPP9 Cluster: Gag-like protein; n=2; Bombyx mori|Rep:
           Gag-like protein - Bombyx mori (Silk moth)
          Length = 553

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 29/83 (34%), Positives = 34/83 (40%)
 Frame = +3

Query: 405 LLAEFLSEKYPALESXFLAYKAKRXXXXXXXXXXXXXXXXXXXXXXXXXXRKTPATYTAA 584
           L AEFL  +YP L + FL +K                                PA+  AA
Sbjct: 7   LFAEFLRLRYPTLSAEFLEFKTHHAANSPAVSVAPVA----------------PASSIAA 50

Query: 585 SVAPSTPVFPILPRKTPAXTAAA 653
           SV P+ PV PIL  KT A T AA
Sbjct: 51  SVTPADPVSPILAPKTSASTVAA 73


>UniRef50_UPI0000D6619F Cluster: PREDICTED: hypothetical protein;
           n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 404

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 547 QARAKLPRH-TPQPPSRPAHPCSPYSREKLPRXP 645
           +ARA+LPR  TP PP+RP  PC P     L R P
Sbjct: 133 RARARLPRRLTPLPPARPPGPCLPGVAASLARRP 166


>UniRef50_UPI0000D55C1F Cluster: PREDICTED: similar to CG2943-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG2943-PA - Tribolium castaneum
          Length = 841

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +3

Query: 195 IAARELCSGSIHSNSIIFILFTKISKIPRIASANLVLP 308
           I A EL  GSI SNS +F  F  IS++P + + + +LP
Sbjct: 655 IVATELYEGSIQSNSTVFSSFA-ISQLPEVKTESYILP 691


>UniRef50_Q5A0J5 Cluster: Potential NADH-dependent flavin
           oxidoreductase; n=5; Saccharomycetales|Rep: Potential
           NADH-dependent flavin oxidoreductase - Candida albicans
           (Yeast)
          Length = 392

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 137 TNNNLLSPVVTSDKTLGRQMCHEPRSGNRTNNEHV 33
           +N+NL  P+   +KT+  ++ H P + NR  ++HV
Sbjct: 4   SNSNLFKPIKVGNKTIKNRIAHLPTTRNRATDDHV 38


>UniRef50_Q06WK9 Cluster: Iron-binding surface protein; n=2;
           Propionibacterium acnes|Rep: Iron-binding surface
           protein - Propionibacterium acnes
          Length = 467

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 558 KTPATYTAASVAPSTPVFPILPRKTPAXTAA 650
           +TP TY  A+ AP+ P  PI P K P+  AA
Sbjct: 158 RTPVTYREATPAPTGPKTPIAPSKQPSKQAA 188


>UniRef50_A4FQW6 Cluster: Membrane-associated oxidoreductase; n=1;
           Saccharopolyspora erythraea NRRL 2338|Rep:
           Membrane-associated oxidoreductase - Saccharopolyspora
           erythraea (strain NRRL 23338)
          Length = 758

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 264 ISKIPRIASANLVLPT---QGPRRKASACLSPGAAPPGQSEEMEFSPTNTLLAE 416
           +++ P   +  + LP+    G  R   A L PG +PP + E     PT+TL+A+
Sbjct: 252 LTRRPFTVAGKIFLPSAHISGDLRMRDAILEPGVSPPRRGESKYDDPTSTLIAD 305


>UniRef50_Q54P03 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 359

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
 Frame = -3

Query: 296 IGRSDSRNFRNFSE*NKYNRIRVNRTTAQFPGGNALQLDAGTNSEKH----LGHRCATNN 129
           I  + + N  N ++ N  N IRVN        GN   ++ G N+  +    L +    NN
Sbjct: 59  ININGNNNINNGNQ-NTPNSIRVNNNNNNNNNGNNNNINNGGNNSLNPNDKLNNNNNNNN 117

Query: 128 NLLSPVVTSDKTLGRQMCHEPRSGNRTNNEH 36
           N+ +    SDK LG    +   +GN   N +
Sbjct: 118 NINNSFSISDKNLGNNNNNNNNNGNINGNNN 148


>UniRef50_A7BC27 Cluster: Putative uncharacterized protein; n=1;
           Actinomyces odontolyticus ATCC 17982|Rep: Putative
           uncharacterized protein - Actinomyces odontolyticus ATCC
           17982
          Length = 448

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -3

Query: 230 VNRTTAQFPGGNALQLDAGTNSE---KHLGHRCATNNNLLSPVVTSDKTLG 87
           V+RT  ++P  NA  L+ G  +E    HLG  C T   LL PV+ S + LG
Sbjct: 285 VSRTLLKYPVFNA-HLEDGVLTEFEQVHLGFACDTPRGLLVPVIRSAQALG 334


>UniRef50_A4FBU1 Cluster: Putative uncharacterized protein; n=1;
           Saccharopolyspora erythraea NRRL 2338|Rep: Putative
           uncharacterized protein - Saccharopolyspora erythraea
           (strain NRRL 23338)
          Length = 785

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 562 LPRHTPQPPSRPAHPCSPYSREKLPRXPRQ 651
           +PRHTP+PP RP  P +P  R + P  P+Q
Sbjct: 342 VPRHTPEPPPRP-QPPAPQPRPE-PPAPQQ 369


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,553,233
Number of Sequences: 1657284
Number of extensions: 11417814
Number of successful extensions: 47144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 43744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47037
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)