Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M22
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    25   0.41 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.7  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.1  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   5.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.9  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
 Frame = +3

Query: 234 NSIIFILFTKISKIP-RIASAN--LVLPTQG----------PRRKASACLSPGAAPPGQS 374
           N+II    T +  +P R+A+ +  LVLPTQG          P+R AS   S     P QS
Sbjct: 162 NNIILGNGTGVQLVPTRLANGDIALVLPTQGASPLPLLVPIPQRTASTASSASNYSPSQS 221

Query: 375 EEME 386
            E E
Sbjct: 222 PEPE 225


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 302 VTDAGASPQGERVFKSRGSPPWAVRRNGVLSNQHTARGILKREIPGP 442
           V + G+S           SPP  +  + V +     R +L R +P P
Sbjct: 100 VQEPGSSTTSATSGAVMASPPMPITTDNVAAISGVLRSLLDRPLPAP 146


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 555 RKTPATYTAASVAPSTPVFPILP---RKTPAXTAAA 653
           R +P      SV+P+TP  P  P   R TP+  A++
Sbjct: 82  RSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDASS 117


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 414 PRAVCWLERTPFLRTAQGG-LPRDLNTR 334
           P+ VC++    F R A+G  +P  ++ R
Sbjct: 637 PKVVCYMTNWAFYRKAEGKFVPEHIDQR 664


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 126 SIITGSHFRQNTWTPD 79
           ++  GS F +N W PD
Sbjct: 111 TLSVGSEFIKNIWVPD 126


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/23 (30%), Positives = 9/23 (39%)
 Frame = +1

Query: 151 PKCFSEFVPASNCKALPPGNCAV 219
           P C   F     C+  PP N  +
Sbjct: 254 PSCLETFHTLEKCRPDPPQNLVI 276


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 89  GRQMCHEPRSGNRTNNEHVH 30
           G+QM H P      +N++ H
Sbjct: 427 GQQMMHRPPGDPAFHNQYAH 446


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 109 SLPTKHLDARCATNRG 62
           S P KHLDA C    G
Sbjct: 422 SNPCKHLDAICQDKLG 437


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = -1

Query: 454  NXDSR-AGYFSLKNSASSVLVGENSISSDCPGGAAPGLKHALALRRGPC 311
            N D +  G     +S    L G N+  +  P G   G  H LA  +  C
Sbjct: 950  NGDRKPGGSLGALSSMFDSLSGNNTGDALAPSGGKKGSSHPLAALQKLC 998


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,037
Number of Sequences: 336
Number of extensions: 2559
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)