Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M22
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   1.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.4  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.4  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   5.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.2  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   7.2  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   9.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   9.5  

>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 445 SRAGYFSLKNSASSVLVGENSISSDCPGGAAPGLKHALALRRGPC 311
           S  GYFS   + SSV +   + +  C   +AP + + + +  GPC
Sbjct: 360 SNLGYFSFP-ADSSVKIKNMAFAQPCSSLSAPFVLNVITVADGPC 403


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 197 NAL-QLDAGTNSEKHLGHRCATNNNLLSPVVTSDKTLGRQMCHEPRSGNRTNNEHVH 30
           NAL Q   G  +  +L  R A++N L S + +S  ++   +  EP   NRT N  V+
Sbjct: 788 NALRQAPIGLKNTNNLSERNASSNLLNSSLFSSFNSVNPLISLEPNPLNRTLNNSVN 844


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 577 PQPPSRPAHPCSPYSREKLPRXP 645
           P PP RP+ P S  S+   PR P
Sbjct: 241 PPPPPRPSQPTSGESQNTNPRFP 263


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 153 QVFLGICTCV*LQGIAARELCSGS 224
           Q FL  C C  L G    E C+GS
Sbjct: 425 QAFLSSCICPVLPGYGLTETCAGS 448


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 637 AGVFRGSMGNTGVLGATEAAVYVA 566
           A  F+G + NTG  G  EA +Y+A
Sbjct: 437 ASYFKGELQNTGKSGIFEANMYLA 460


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 55  LPDLGSWHIWRPSVLSEVTTGDNRLLFVAHLWPK 156
           LPD+ + H W   +   + +  + ++ VA+ W K
Sbjct: 213 LPDIKNLHYWTTRLSPLINSNTDAIVLVANRWGK 246


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 342  LSPGAAPPGQSEEMEFSPTNTLLAEFLSEKY 434
            L P  A PGQ    + +    L+ E L EK+
Sbjct: 1266 LLPSKAAPGQLTVKQLNEARVLIGEILPEKF 1296


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 393  ERTPFLRTAQGGLPRDLNTRSPC 325
            +RTP L   +GG+P D  T  PC
Sbjct: 1326 KRTP-LTECEGGVPLDAGTLHPC 1347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,574
Number of Sequences: 5004
Number of extensions: 41732
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)