Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M22
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0490 + 22672241-22674679 32 0.35
03_05_1081 + 30235677-30236474 30 1.4
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268... 30 1.9
02_05_1189 + 34839840-34840106,34840228-34840346,34841025-348412... 29 2.4
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575... 29 3.2
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842... 29 4.3
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 29 4.3
05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501... 28 5.6
02_04_0002 - 18825310-18825873 28 5.6
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 26 5.9
12_02_0033 + 12530311-12531264 27 9.9
10_03_0032 - 7245885-7245991,7246199-7246549,7246663-7246740,724... 27 9.9
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 27 9.9
05_02_0124 + 6849034-6851502 27 9.9
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 27 9.9
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337... 27 9.9
>01_05_0490 + 22672241-22674679
Length = 812
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 568 RHTPQPPSRPAHPCSPYSREKLPRXPRQ 651
R PQPPSRPA P P +++ P PR+
Sbjct: 653 RKPPQPPSRPAPPPPPPPQQQPPFYPRR 680
>03_05_1081 + 30235677-30236474
Length = 265
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 556 AKLPRHTPQPPSRPAHPCSPYSREKLPRXPRQL 654
AK+P + P P + PA P P + +P P QL
Sbjct: 34 AKIPTYPPPPSAYPAAPPPPVMGQPVPPPPAQL 66
>03_06_0528 -
34526038-34526164,34526250-34526500,34526584-34526804,
34526963-34527017
Length = 217
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 276 PRIASANLVLPTQGPRRKASACLSPGAAPPGQSEEMEFSPTNTLLA 413
PR A+AN+V P PR A+ +SP AA PG++++ E S + LA
Sbjct: 63 PR-AAANVVSPLASPR--AAGDISPLAASPGRAQQ-EMSSSRCTLA 104
>02_05_1189 +
34839840-34840106,34840228-34840346,34841025-34841217,
34841245-34841364,34841660-34841775,34842527-34842875,
34843279-34843542,34843640-34843758,34843929-34844313
Length = 643
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 550 ARAKLPRHTPQPPSRPAH 603
AR +LPR P PPSR AH
Sbjct: 56 ARRELPRSPPPPPSRKAH 73
>12_01_0673 -
5745956-5750346,5750788-5750872,5751018-5751082,
5751816-5751993
Length = 1572
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 185 LDAGTNSEKHLGHRCATNNNLLSPVVTSDKTLGRQ 81
++ T+S + LGH ++N+ ++T DK +GR+
Sbjct: 274 INGATSSSQKLGHLASSNDRQTGSMLTVDKFVGRE 308
>12_02_0947 +
24680119-24681497,24682213-24682275,24683380-24684239,
24684399-24684772,24685932-24686112,24686201-24686220
Length = 958
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 644 GXRGSFSREYGEH-GCAGRDGGCGVCRG 564
G R + +GE GC G DGG G CRG
Sbjct: 549 GRRDGYGAGFGERSGCGGDDGG-GNCRG 575
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 306 PTQGPRRKASACLSPGAAPPGQSEEMEFSPTNTL 407
P R + C SP +PPGQS +S +++L
Sbjct: 539 PAPDSERPWALCRSPRPSPPGQSHSRSYSRSHSL 572
>05_03_0470 +
14448243-14448482,14448568-14449181,14449508-14450135,
14450217-14450827,14450911-14451162,14451243-14451353,
14451441-14451501,14451603-14451695,14451773-14451940
Length = 925
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 228 HSNSIIFILFTKISKIPRIASANLVLPTQGPRRKASACLSPGAA 359
H N I F L T ++ P + L P + P+RKA+ ++P A
Sbjct: 461 HKNDISFGLGTDATQKPVVPKPGLGKPPRPPKRKAAMEIAPPEA 504
>02_04_0002 - 18825310-18825873
Length = 187
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 198 AARELCSGSIHSNSIIFILFTKISK-IPRIASANLVLPTQGPRRKASACLSPGAAPPGQS 374
A R LCS + + L TK + + R+A +L CL+ PP
Sbjct: 18 ARRRLCSLLALAGDYLKYLLTKRGRFLGRVARRSLAALLLSSGGGGKPCLATAPWPPCAL 77
Query: 375 EEMEFSPTNTLLAEFLSEK 431
E EFS +N+ FL+ +
Sbjct: 78 AEREFSCSNSPSPAFLAAR 96
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 25.8 bits (54), Expect(2) = 5.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 571 HTPQPPSRPAHPCSPYSREKL 633
H PQP +P +P PY+ + L
Sbjct: 851 HQPQPQPQPPYPQPPYNAQGL 871
Score = 20.6 bits (41), Expect(2) = 5.9
Identities = 9/36 (25%), Positives = 15/36 (41%)
Frame = +1
Query: 349 PGQPPLGSPKKWSSLQPTHCSRNS*ARNTRPSNXNF 456
P QPP G+P + H + +P N ++
Sbjct: 799 PQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDY 834
>12_02_0033 + 12530311-12531264
Length = 317
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -1
Query: 214 HSSRAAMPCN*TQVQIPRNTWATDVPRTIIYYHR*SLPTKHL 89
H MPCN V I W P + + R L T+HL
Sbjct: 67 HDGINDMPCNTANVIIVATPWENGDPHYAVDHTRDGLQTRHL 108
>10_03_0032 -
7245885-7245991,7246199-7246549,7246663-7246740,
7246824-7246896
Length = 202
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 285 ASANLVLPTQGPRRKASACLSPGAAPPGQSEEMEFSPTNT 404
ASA LV P+Q R + CL G G SE + F +N+
Sbjct: 117 ASAELVDPSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNS 156
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 547 QARAKLPRHTPQPPSRPAHPCSPYSREKLPRXPRQ 651
Q ++ PR++P P R + YSR PR R+
Sbjct: 143 QRYSRSPRYSPPPRGRSPYRSPSYSRSPSPRYARR 177
>05_02_0124 + 6849034-6851502
Length = 822
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 559 KLPRHTPQPPSRPAHPCSPYSREKLPRXPRQL 654
KLPR P PP P+ P S + PR P+ L
Sbjct: 11 KLPRQPPPPPPPPSPPNSTF-----PRYPKSL 37
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 327 KASACLSPGAAPPGQSEEMEFSPTNTLLAEFLSEKYPALESXFLA 461
+A+ L P PG +SPT+ + EF E Y L +A
Sbjct: 555 QAADVLKPNVMAPGHHIWGAWSPTSDAMVEFQGESYAMLSGTSMA 599
>02_04_0554 -
23831212-23832163,23833173-23833438,23833694-23833748,
23834384-23834436,23834512-23834588,23834730-23834862,
23834958-23835098,23835840-23835960,23836137-23836242,
23836523-23836592,23836716-23836885,23837253-23837277,
23837662-23837777,23838926-23839217
Length = 858
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 550 ARAKLPRHTP--QPPSRPAHPCSPYSREKLPRXP 645
A A+LP P PP+ A P +P+ LPR P
Sbjct: 2 AAARLPSPAPVAHPPALRARPLAPHLYAALPRAP 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,624
Number of Sequences: 37544
Number of extensions: 337025
Number of successful extensions: 1518
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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