Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M22
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)                     29   4.4  
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)                   28   7.6  

>SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)
          Length = 357

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 547 QARAKLPR-HTPQPPSRPAHPCSPYSREKLPRXPR 648
           Q + + PR H PQP S    P  P S +  P+ PR
Sbjct: 320 QLQLQQPRSHQPQPRSHQPQPQQPRSHQPQPQQPR 354


>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
          Length = 619

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 577 PQPPSRPAHPCSPY 618
           P PP+RP+H C P+
Sbjct: 51  PPPPTRPSHSCGPH 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,453,400
Number of Sequences: 59808
Number of extensions: 384319
Number of successful extensions: 1474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)