Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M22
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    24   1.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    24   1.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.0  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 91  LDARCATNRGRAIERTMSTSTRVGCSK 11
           LD    TN GR +++ +  +   GC+K
Sbjct: 48  LDEGPCTNEGRELKKILPDALSTGCNK 74


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 91  LDARCATNRGRAIERTMSTSTRVGCSK 11
           LD    TN GR +++ +  +   GC+K
Sbjct: 48  LDEGPCTNEGRELKKILPDALSTGCNK 74


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +3

Query: 306 PTQGPRRKASACLSPGAAPPGQSEEMEFSPTNTLLAEFLSEKYPALESXF 455
           P   PR++  A    G      S++ + +P     A   S  YP + S F
Sbjct: 219 PGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGAASANLPSPLYPWMRSQF 268


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 126 SIITGSHFRQNTWTPD 79
           ++  GS F +N W PD
Sbjct: 82  TLSVGSEFIKNIWVPD 97


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 126 SIITGSHFRQNTWTPD 79
           ++  GS F +N W PD
Sbjct: 82  TLSVGSEFIKNIWVPD 97


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 126 SIITGSHFRQNTWTPD 79
           ++  GS F +N W PD
Sbjct: 21  TLSVGSEFIKNIWVPD 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,816
Number of Sequences: 438
Number of extensions: 3547
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)