Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M22
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate ...    28   6.2  
At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate ...    28   6.2  
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    28   6.2  
At1g04910.1 68414.m00488 expressed protein contains Pfam PF03138...    28   6.2  

>At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate
           deaminase, putative similar to SP|P15274 AMP deaminase
           (EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00962:
           Adenosine/AMP deaminase
          Length = 839

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 201 RQCLAIRRRYKFRETLGP 148
           ++CL +R+RY F+ET+ P
Sbjct: 252 QECLELRKRYVFQETVAP 269


>At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate
           deaminase, putative similar to SP|P15274 AMP deaminase
           (EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00962:
           Adenosine/AMP deaminase
          Length = 839

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 201 RQCLAIRRRYKFRETLGP 148
           ++CL +R+RY F+ET+ P
Sbjct: 252 QECLELRKRYVFQETVAP 269


>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 98  CRK*LPVIIDYCSWHICGPSVSRNLYLRLIARHCRPGT 211
           C+   P +IDYC  H  G  V      R+++  C PG+
Sbjct: 380 CKSASPQLIDYCLKHFGGVLVDDG--SRVVSSRCNPGS 415


>At1g04910.1 68414.m00488 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein'  based on similarity to axi 1
           protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 519

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 133 FVAHLWPKCFSEFVPASNCKALPPGN 210
           F  + WP+CF +  P  +    PP N
Sbjct: 464 FYTNSWPECFCQMNPKKSSDKCPPNN 489


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,954,374
Number of Sequences: 28952
Number of extensions: 239166
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)