Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M21
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 31 1.0
02_04_0375 - 22464814-22465577,22466930-22466950,22467036-22467213 31 1.0
01_05_0475 - 22571571-22572466,22572626-22572947 30 1.4
09_04_0517 - 18253325-18253870,18254209-18254781,18254888-182551... 29 2.4
11_06_0710 - 26492093-26493460 28 5.5
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 28 5.5
02_04_0013 - 18910009-18910056,18910154-18910282,18910373-189104... 28 5.5
11_06_0443 - 23631407-23631586,23631736-23631848,23632156-236322... 28 7.2
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 28 7.2
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 188 IFPEPKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQD 307
+ PE +K++ K FIKE +++ K KQ+ + K++ D
Sbjct: 272 VLPEDEKEKFKEFIKERVRERKRELKQAKEARKKAIDDMD 311
>02_04_0375 - 22464814-22465577,22466930-22466950,22467036-22467213
Length = 320
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 239 MKQLKYIQKQSPKETSKSLRTQDMTNSATGSTIGQVKSSPSNKSAKISLNIGK-PGAANR 415
+KQL + KQ TSK+ R S G + Q +SP++K + SL + K PG +
Sbjct: 44 LKQL-FDAKQRNSNTSKAQRRPGTWFSGNGVGVKQAPASPASKQMEPSLPLVKIPGPESS 102
Query: 416 KKLSDNVRIKKGDMAE 463
K+ + + I D E
Sbjct: 103 KENNGVMWISSPDRLE 118
>01_05_0475 - 22571571-22572466,22572626-22572947
Length = 405
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 122 NECVFKKKFSCSLTINMYTLKGIFPEPKKDQKKNFIKENMKQLKYIQKQ 268
NE + K+KFSC + +N L+ + + ++ N I N K L ++ Q
Sbjct: 129 NEEMVKRKFSCIICLNSDGLRNLLGDGSPIEQNNLIYSNGKCLIVVELQ 177
>09_04_0517 -
18253325-18253870,18254209-18254781,18254888-18255100,
18255554-18255685,18255804-18255944,18256104-18256325
Length = 608
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +2
Query: 407 ANRKKLSDNVRIKKGDMAEFLKRKELXQMKPVXLQNDDENSSESSGHLRDVACXTIESNL 586
A K+ + K G + ++ + PV L D + S +S +RD C ++ +
Sbjct: 146 AREKRPQYHHNFKAGALNALIRVSSVISDSPVILNVDCDMYSNNSDSIRDALCFFLDEEM 205
Query: 587 SQKL 598
QK+
Sbjct: 206 GQKI 209
>11_06_0710 - 26492093-26493460
Length = 455
Score = 28.3 bits (60), Expect = 5.5
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
Frame = +2
Query: 203 KKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQD-MTNSATGSTIGQVKSSPSNKSAKI 379
KK +KK+ K + +K+S K++ S +D S KS K
Sbjct: 138 KKKKKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPDDDEDDKKKSKKK 197
Query: 380 SLNIGKPGAANRKKLSDNVRIKKGDMAEFLKRKELXQMKPVXLQNDDENSSESSG 544
S + GA +KK + + E K+K + K +DE S+S G
Sbjct: 198 SSDEDNDGAKKKKKKKSKGKSSDEEDDEKPKKKSKSKSKSSSSDEEDEKKSKSEG 252
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 425 SDNVRIKKGDMAEFLKRKELXQMKPVXLQNDDENSSESSGHLRDVACXTIESNLSQKLTE 604
S+N++++KG ++ K L + P Q+D+ S+ L + E+N Q L
Sbjct: 393 SENIQLRKGLLSPNKKDFHLSSISPTKKQSDNVEDKLSNAELSTIYVHKQENNDVQGLIP 452
Query: 605 STKLTV 622
+ T+
Sbjct: 453 QKQATI 458
>02_04_0013 -
18910009-18910056,18910154-18910282,18910373-18910420,
18910532-18910594,18910675-18910713,18912107-18912180,
18913014-18913072,18913265-18913324,18913466-18913590,
18914054-18914112,18914356-18914419,18914516-18914569,
18914727-18914765,18916135-18916275
Length = 333
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 194 PEPKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQD 307
PE ++++ K F+KE +++ K KQ+ + K++ D
Sbjct: 251 PEDEREKMKEFLKEKVRERKRELKQAKEARKKAIDDMD 288
>11_06_0443 -
23631407-23631586,23631736-23631848,23632156-23632218,
23632322-23632613
Length = 215
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/93 (21%), Positives = 40/93 (43%)
Frame = +2
Query: 197 EPKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQDMTNSATGSTIGQVKSSPSNKSAK 376
+ KKD K I + KQ+K K+S T + T + T + SS S +
Sbjct: 49 DKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESM 108
Query: 377 ISLNIGKPGAANRKKLSDNVRIKKGDMAEFLKR 475
+ P +++ ++ +++ + +FL+R
Sbjct: 109 TDI----PSSSDNSAVTPDIKNYISIIGQFLQR 137
>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 27.9 bits (59), Expect = 7.2
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Frame = +2
Query: 197 EPKKDQKKN-FIKENMKQLKYIQKQSPKETSKSLRTQDMTNSATGSTIGQVKSSPSNKSA 373
EP+ +K+ FI+ +KY +++ S SL + + S+ S I S +K++
Sbjct: 823 EPRPSKKRRVFIRSVSDYVKYAKREPSNGRSTSLLSTIIKKSSAASHILNSSLSADSKTS 882
Query: 374 KISLNIGKPGAANRKKLSDNVRIKKGDMAEFLK--RKELXQMKPVXLQ-NDDENSSES 538
S + K ++ + S + R + LK K ++ P+ N ++SS S
Sbjct: 883 GFSSSGNKHKGSHVEDASKSPRSNSDIHSSVLKTPSKSANELSPIFSPLNPSKSSSRS 940
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,079,018
Number of Sequences: 37544
Number of extensions: 258756
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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