Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M19
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             29   1.00 
At4g16141.1 68417.m02446 expressed protein contains 1 predicted ...    27   5.3  
At5g07790.1 68418.m00892 expressed protein                             27   7.0  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 165 ISGSRARFQLSGNSGRKHSRCCTSILRKFSG 257
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
           transmembrane domain; contains a partial Pfam PF00320:
           GATA zinc finger profile
          Length = 226

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 371 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDT 267
           K E     SDV+NG C +S  G G T    V+C T
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGT 44


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 105 ISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 239
           +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 414 VKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,251,227
Number of Sequences: 28952
Number of extensions: 152761
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)