Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M17
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)                     55   6e-08
SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)           38   0.007
SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           38   0.009
SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           38   0.009
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   29   4.3  

>SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 662

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = +1

Query: 103 LRCXCAGARACPDGSSNGTCVTQVGGYCFVAVEEVLDXSGSVVLDRTAGCLSADESGLMQ 282
           +RC C+   +CP    N TC T   G C+   +++ +  G  ++  T GCL  +E   MQ
Sbjct: 188 IRCKCS-EHSCPGDRINDTCTTT--GKCY---KKIAEEEGYELI--TYGCLPPEEQTDMQ 239

Query: 283 CKSSQVPHXHPKVIECCYDDDLCNLRLHPQLSEP-SPDV 396
           C +    H +   + CC + DLCN  L P    P SP +
Sbjct: 240 CNTPASVHRNKISVLCCNNRDLCNFELDPTFPPPTSPTI 278



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +2

Query: 584 SGSGLPXLVQRTVAKQIXMVES 649
           SGSGLP LVQRT+AKQ+ +V+S
Sbjct: 355 SGSGLPLLVQRTIAKQVTLVQS 376


>SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)
          Length = 1602

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +2

Query: 581 GSGSGLPXLVQRTVAKQIXMVE 646
           GSGSGLP LVQRTVA+QI  +E
Sbjct: 197 GSGSGLPLLVQRTVARQITPIE 218


>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 457

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +2

Query: 581 GSGSGLPXLVQRTVAKQIXMVES 649
           GSGSGLP LVQRTVA++  ++ES
Sbjct: 178 GSGSGLPLLVQRTVARETQLIES 200


>SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 386

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +2

Query: 581 GSGSGLPXLVQRTVAKQIXMVES 649
           GSGSGLP LVQRTVA++  ++ES
Sbjct: 107 GSGSGLPLLVQRTVARETQLIES 129


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 322  IECCYDDDLCNLRLHPQLSEPSPDVTXSPGVRPPITSSPT 441
            + C  +  LCN    P    PSP +  SP   P  + SP+
Sbjct: 1619 LSCQIESKLCNAIPCPASPSPSPSILPSPSSSPSPSPSPS 1658


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,982
Number of Sequences: 59808
Number of extensions: 234229
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)