Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M17
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family...    31   0.66 
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low...    28   4.7  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    27   8.1  
At3g17250.1 68416.m02205 protein phosphatase 2C-related / PP2C-r...    27   8.1  

>At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family
           protein
          Length = 161

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 268 SGLMQCKSSQVPHXHPKVIECCYDDDLCNLRLHPQLSEPSPDVTXSP 408
           S L+ CK S+V   H  ++ CC  D        P  S P    T +P
Sbjct: 4   SNLLACKFSEVSSMHRLLVLCCITDCFSEPATRPHKSPPQTIQTPTP 50


>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
           similarity to DNA polymerase kappa [Mus musculus]
           GI:14279087; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 785

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 208 LDXSGSVVLDRTAGCLSADESGLMQCKSSQVPHXHPK-VIE 327
           LD + S  LD    CLS DESG +   S +    H K V+E
Sbjct: 459 LDDNDSFDLDANKNCLSNDESGNVSFGSHETSSAHLKDVVE 499


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 349 CNLRLHPQLSEPSPDVTXSPGVRPPITS-SPT 441
           C     P +  PSP  T SPG  PP  S SP+
Sbjct: 400 CGRSTRPPVVVPSPPTTPSPGGSPPSPSISPS 431


>At3g17250.1 68416.m02205 protein phosphatase 2C-related /
           PP2C-related similar to protein phosphatase-2C
           GB:AAC36698 from [Mesembryanthemum crystallinum]
          Length = 422

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 337 RNSTRLLSGXDVALVNFCIASSPTRQRR 254
           R + RL S  +V +V  C +SSP  QRR
Sbjct: 375 REALRLDSSDNVTVVVICFSSSPAPQRR 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,463,627
Number of Sequences: 28952
Number of extensions: 160583
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)