Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M16
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    80   3e-16
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    26   5.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.4  

>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 46/129 (35%), Positives = 73/129 (56%)
 Frame = +3

Query: 261 LFGKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEPQTDI 440
           LF K  KS  ++VR L D +  LE  + K +K+ E+VSK L  ++  L GT++ EP  D+
Sbjct: 4   LFNKRPKSTQDVVRCLCDNLPKLEINNDK-KKSFEEVSKCLQNLRVSLCGTAEVEPDADL 62

Query: 441 IVAQLAQEMYXXXXXXXXXXXXXRIXFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTKPE 620
            V+ L+ ++Y             ++ FE KKD   +F+ +LRR + +R PTV+Y+   P+
Sbjct: 63  -VSDLSFQIYQSNLPFLLVRYLPKLEFESKKDTGLIFSALLRRHVASRYPTVDYMLAHPQ 121

Query: 621 ILFTLMSGY 647
           I   L+S Y
Sbjct: 122 IFPVLVSYY 130


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 17  FENYNNLSKSKFYVCFNVYFLSKMQF---VAYYKHFLNSLNQ 133
           F    N+SKS +Y    ++F+ +  F     YY + ++ +NQ
Sbjct: 173 FRTIQNISKSIWYTRLGIFFIEETHFGDLKNYYTNVVDEVNQ 214


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 348 AEKAQEDVSKNLVLIKNMLYGTSDAEPQTDIIVAQLAQ 461
           A +AQED +K L L+   +YGT   + +T++   +L +
Sbjct: 185 AAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEE 222


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
 Frame = -1

Query: 299  NKLRRAFLRLTKE-----RHSIKATWAGDI-SNYV 213
            N LRR FLRL K+      + ++ +  GD+ SNYV
Sbjct: 1070 NALRRGFLRLNKKLGNVIHYDLRKSSEGDVDSNYV 1104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,418
Number of Sequences: 5004
Number of extensions: 47758
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)