Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M16
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             30   1.9  
SB_22533| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_5| Best HMM Match : No HMM Matches (HMM E-Value=.)                  28   5.7  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   5.7  
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   28   7.5  
SB_16251| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0018)           27   9.9  
SB_5768| Best HMM Match : EGF (HMM E-Value=3.5e-06)                    27   9.9  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 240 SRLNTMPLFGKSQKSPAELVRSLKDAVTALERGDKKAEK--AQEDVSKNLVLIKNMLYGT 413
           +RLN    F  + K PAE++R  ++     E+  +KA K   +++  +  +++  ++Y  
Sbjct: 50  NRLNNFKKFKDNYKDPAEILRKKREERERQEKERRKALKIEREKEQERQGIILPEIIYSD 109

Query: 414 SDAE 425
            D E
Sbjct: 110 YDEE 113


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 261  LFGKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLV-LIKNML 404
            LFGK  ++       LK+     ERGD++ E ++ED    L+  +KN+L
Sbjct: 2728 LFGKGLQTHQNEKTGLKEEFETAERGDEEFETSEEDDHYTLMEKVKNIL 2776


>SB_22533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 53  YVCFNVYFLSKMQFVAYYKHFLNSLNQPGWQSL 151
           +VC       +M+  +++K FLNS N  G++ L
Sbjct: 400 FVCKRTKLALRMRICSHWKRFLNSANDAGYEKL 432


>SB_5| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 440 DICLWFCIRCTIKHIFNQYQILAHVFLSFFSFLITPL*SRHGIF 309
           D+ +   I  +I +I+ QY+++AHV+ S   F      SR G +
Sbjct: 89  DVRIASVICLSIANIYRQYEVVAHVYQSAIEFKCISSGSRAGSY 132


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 273  SQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDA 422
            SQ+   E  +   + + A    DKK + A E VSKN+V  K      S++
Sbjct: 954  SQEKVGEAAQPESNKIEATASSDKKKDLAAEKVSKNVVTRKRPASSESES 1003


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 520 LKEKKMWPKFSTMSLDVKLEHDLQQ*STFVPSLKYYL 630
           L E+   PK     L +  E+DLQQ  T VP L  YL
Sbjct: 460 LTEEDKPPKEFDQRLPIITENDLQQLQTSVPELSEYL 496


>SB_16251| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0018)
          Length = 213

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 138 VGSRF*FVKFRFPNILVEIEVQSYVDIITYITCPSRLNTMPLFGKS 275
           V   + FV+FR  N +  + +QSY     ++T  S L     FG S
Sbjct: 6   VAGNYEFVRFRSENCMDALGLQSYAIHDNHLTTSSSLEPNTTFGPS 51


>SB_5768| Best HMM Match : EGF (HMM E-Value=3.5e-06)
          Length = 270

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = +2

Query: 47  KFYVCFNVYFLSKMQFVAYYKHFLNSLNQPGWQSLLICQISLP*HSRGNRSTILCRHNYL 226
           +FY C NV+F    Q ++  + F +S    G + LL+  +  P   +G   TI  ++  L
Sbjct: 36  EFYACVNVFFFFLCQSIS-GRRFRSSGIGSG-RGLLM-SLKQPTSLKG---TIWGKYEEL 89

Query: 227 YHLPKSP*YY 256
           YHLP    YY
Sbjct: 90  YHLPFPENYY 99


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 324 ALERGDK--KAEKAQEDVSKNLVLIKNMLYGTSDAE 425
           ALE G +  +   A+E+  K LVLI +M  G SDAE
Sbjct: 455 ALEAGSEVLQGPGARENAHKVLVLITDMTSGLSDAE 490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,999,410
Number of Sequences: 59808
Number of extensions: 337250
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)