Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M16
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...   131   5e-31
U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical pr...   130   1e-30
Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical pr...   129   1e-30
AF098995-9|AAC67486.1|  295|Caenorhabditis elegans F-box b prote...    30   1.2  
AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.      29   2.1  
AF039716-8|AAB96738.1|  384|Caenorhabditis elegans Paf-acetylhyd...    29   2.1  
U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical p...    27   8.7  

>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score =  131 bits (316), Expect = 5e-31
 Identities = 71/151 (47%), Positives = 97/151 (64%), Gaps = 16/151 (10%)
 Frame = +3

Query: 243 RLNTMPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKN 380
           R   MPL FGKS KSPA++V++L++ +T L++              DKK +KA ++VSKN
Sbjct: 256 RRKVMPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKN 315

Query: 381 LVLIKNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIXFEGKKDVAQVFN 554
           + +IK+ +YG   AEP ++ +V  AQLAQE+Y             +  FE KKDV Q+FN
Sbjct: 316 VAMIKSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFN 375

Query: 555 NVLRRQIGTRSPTVEYICTKPEILFTLMSGY 647
           N+LRRQIGTRSPTVEY+  +PEIL  L+ GY
Sbjct: 376 NLLRRQIGTRSPTVEYLGARPEILIQLVQGY 406


>U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical
           protein R02E12.2b protein.
          Length = 377

 Score =  130 bits (313), Expect = 1e-30
 Identities = 70/147 (47%), Positives = 96/147 (65%), Gaps = 16/147 (10%)
 Frame = +3

Query: 255 MPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLI 392
           MPL FGKS KSPA++V++L++ +T L++              DKK +KA ++VSKN+ +I
Sbjct: 1   MPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMI 60

Query: 393 KNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIXFEGKKDVAQVFNNVLR 566
           K+ +YG   AEP ++ +V  AQLAQE+Y             +  FE KKDV Q+FNN+LR
Sbjct: 61  KSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLR 120

Query: 567 RQIGTRSPTVEYICTKPEILFTLMSGY 647
           RQIGTRSPTVEY+  +PEIL  L+ GY
Sbjct: 121 RQIGTRSPTVEYLGARPEILIQLVQGY 147


>Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical
           protein Y53C12A.4 protein.
          Length = 338

 Score =  129 bits (312), Expect = 1e-30
 Identities = 66/135 (48%), Positives = 89/135 (65%), Gaps = 5/135 (3%)
 Frame = +3

Query: 258 PLFGKSQKSPAELVRSLKDAVTALER-----GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 422
           PLFGK+ K+PA++V++L+DA+  ++R      ++K EKA E+ +K L L K  +YG+   
Sbjct: 4   PLFGKADKTPADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDAN 63

Query: 423 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIXFEGKKDVAQVFNNVLRRQIGTRSPTVEY 602
           EP  +  V QLAQE+Y             +  FE KKDVA VFNN+LRRQIGTRSPTVEY
Sbjct: 64  EPNNEQ-VTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEY 122

Query: 603 ICTKPEILFTLMSGY 647
           +  +PEIL TL+ GY
Sbjct: 123 LAARPEILITLLLGY 137


>AF098995-9|AAC67486.1|  295|Caenorhabditis elegans F-box b protein
           protein 19 protein.
          Length = 295

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 302 SNKLRRAFLRLTKERHSIKATWAGDISNYVYIRLYFDFHENVREAKFDKLKATANLAGL 126
           SNK RR  +++ KE++ I     G   +  ++ L FD+  N +  K D  +   +L+ L
Sbjct: 35  SNKTRR-LIKMLKEKNHITCISMGSPISIDFLSLTFDYKSNQKIVKIDNPEQNGSLSRL 92


>AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 534 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 635
           D   VF N L +Q G   PT  Y+C +  I  TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350


>AF039716-8|AAB96738.1|  384|Caenorhabditis elegans
           Paf-acetylhydrolase protein 1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 534 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 635
           D   VF N L +Q G   PT  Y+C +  I  TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350


>U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical
           protein T28A11.5 protein.
          Length = 194

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  NYNNLSKSKFYVCFNVYFLSKMQFV 97
           N   L+  KF+VC  V F++KM F+
Sbjct: 35  NCTELTFKKFFVCLYVNFMAKMYFL 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,766
Number of Sequences: 27780
Number of extensions: 262452
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)