Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M14
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 93 1e-19
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 31 0.76
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 28 4.1
10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339 27 7.1
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 27 7.1
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754... 27 9.4
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 9.4
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 93.1 bits (221), Expect = 1e-19
Identities = 39/66 (59%), Positives = 52/66 (78%)
Frame = +2
Query: 53 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 232
TVKDV + VK +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67
Query: 233 YIRSPV 250
Y+R +
Sbjct: 68 YLRQGI 73
Score = 75.8 bits (178), Expect = 2e-14
Identities = 32/64 (50%), Positives = 47/64 (73%)
Frame = +3
Query: 252 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRX 431
GV KI+GGR+RNG P HFC+SSG+I+R LQ L+ + +++ GGR++T+QGRR
Sbjct: 74 GVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRD 133
Query: 432 LDRI 443
LD++
Sbjct: 134 LDQV 137
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +2
Query: 23 LPTQGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWF 199
+P+ ++ ++ V D +++ + + H K TG ++ E+ ++ L PY D F
Sbjct: 219 MPSASEVAALIVNDTSENQKGRDIIVHYKDTGPRRISENHPKFMAMQYPLLFPYGEDGF 277
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 160 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 38
S +YK+ +LRYLD + S S SFN+L+ L T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591
>10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339
Length = 697
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 225 VIFTFAHLFGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLV--EKVQDG 398
+I FA +T +F +RNG +HF SS A + +LE K V ++ G
Sbjct: 237 LIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSG 296
Query: 399 GRILTTQGRRXLD 437
R+ G LD
Sbjct: 297 ERLSAFVGNTILD 309
>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 71 QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIY 235
+D+I+ + ++ V+VP + +LV TA L P D W +R A LR +
Sbjct: 947 EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAH 997
>04_04_1161 +
31374240-31374403,31374495-31374812,31375347-31375493,
31375674-31375754,31375799-31375886,31375999-31376176,
31376705-31376794,31376795-31376866,31377247-31377257
Length = 382
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 177 LRMTLIGSMCVVLPSFVIFTFAHLFGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK-AL 353
L+++ + +C+V P+FV F + F + + G R+G H C + I+++ L
Sbjct: 276 LQISSVILVCLVSPAFVDFPLSLDFRTFSDKSLQAGVLRDGYPFKHSCNEAIQISKRIEL 335
Query: 354 QSLEAL 371
SL L
Sbjct: 336 SSLATL 341
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 399 HRPELSQQASMPPTIAKPCVQYCLMTCRN 313
H + + + P TIA+ +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,791
Number of Sequences: 37544
Number of extensions: 273995
Number of successful extensions: 705
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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