Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M14
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          65   4e-11
SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        29   2.4  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   3.1  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        27   9.5  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 31/57 (54%), Positives = 38/57 (66%)
 Frame = +3

Query: 273 IFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRXLDRI 443
           I  GRK  G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+R +DRI
Sbjct: 32  IRAGRKNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 21/32 (65%), Positives = 29/32 (90%)
 Frame = +2

Query: 113 TGKVKVPEHMDLVKTARFKELAPYDPDWFYVR 208
           +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIR 33


>SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = -2

Query: 308 RCNSITFAPTEDLGDSLDSKQVSECKYDEGWQHN----AHRTNQGHTEPAL*SELSLQDP 141
           R     F P  D G   D+K+  +  Y+  ++HN     H    G  E  + +  ++   
Sbjct: 462 RARECIFWPVSDGGPQFDAKEFEDFAYEWDFEHNLSSPGHPNANGKVESGVKAAKAMLSK 521

Query: 140 CAQ 132
           CAQ
Sbjct: 522 CAQ 524


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 266  DSLDSKQVSECKYDEGWQHNAHRTNQG 186
            DS+  K+V+ CK +E W  + H T  G
Sbjct: 996  DSVSGKEVTSCKKNETWIADCHFTRDG 1022


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 311 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 403
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 21  TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 311 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 403
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316



 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 311 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 403
           TF   +   C +GF ++G  + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 64  C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 183
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 222 FVIFTFAHLFGVKTVTKIFGGRKRNGVTPSHFCR 323
           FV  T  H F  + +T+ F  +   G  P  FCR
Sbjct: 163 FVTNTHHHRFSSRALTRPFCFKNTTGTKPKFFCR 196


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 311  TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 418
            T+   I   C +G+A++G      +++G WS S+ T
Sbjct: 913  TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,046,715
Number of Sequences: 59808
Number of extensions: 323095
Number of successful extensions: 910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)