Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M14
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    87   7e-18
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    87   7e-18
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    27   6.3  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 87.0 bits (206), Expect = 7e-18
 Identities = 38/66 (57%), Positives = 49/66 (74%)
 Frame = +2

Query: 44  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 223
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 224 RHIYIR 241
           RH+Y R
Sbjct: 63  RHLYFR 68



 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +3

Query: 252 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 428
           G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+
Sbjct: 71  GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130

Query: 429 XLDRI 443
            LDRI
Sbjct: 131 DLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 87.0 bits (206), Expect = 7e-18
 Identities = 38/66 (57%), Positives = 49/66 (74%)
 Frame = +2

Query: 44  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 223
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 224 RHIYIR 241
           RH+Y R
Sbjct: 63  RHLYFR 68



 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +3

Query: 252 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 428
           G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+
Sbjct: 71  GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130

Query: 429 XLDRI 443
            LDRI
Sbjct: 131 DLDRI 135


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 226 SYLHSLTCLESRLSPRSSVGANVMEL 303
           S  H    + SRLSPRS +G N+ E+
Sbjct: 67  STFHPEKYISSRLSPRSRLGNNIFEM 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,670,514
Number of Sequences: 27780
Number of extensions: 235843
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)