Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M14
(531 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 87 7e-18
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 87 9e-18
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 86 2e-17
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 30 1.1
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 1.5
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 29 2.0
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi... 28 3.4
At4g20920.1 68417.m03032 double-stranded RNA-binding domain (DsR... 27 6.0
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.9
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 27 7.9
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 27 7.9
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 27 7.9
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 87.0 bits (206), Expect = 7e-18
Identities = 35/63 (55%), Positives = 49/63 (77%)
Frame = +2
Query: 53 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 232
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 233 YIR 241
Y+R
Sbjct: 66 YLR 68
Score = 70.5 bits (165), Expect = 6e-13
Identities = 30/64 (46%), Positives = 43/64 (67%)
Frame = +3
Query: 252 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRX 431
GV +I+GG KRNG P HFC+SSG +AR LQ L+ + +V+ GGR +T+ G+R
Sbjct: 72 GVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRD 131
Query: 432 LDRI 443
LD++
Sbjct: 132 LDQV 135
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 86.6 bits (205), Expect = 9e-18
Identities = 36/63 (57%), Positives = 48/63 (76%)
Frame = +2
Query: 53 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 232
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 233 YIR 241
Y+R
Sbjct: 66 YLR 68
Score = 73.3 bits (172), Expect = 9e-14
Identities = 33/64 (51%), Positives = 43/64 (67%)
Frame = +3
Query: 252 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRX 431
GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+R
Sbjct: 72 GVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRD 131
Query: 432 LDRI 443
LD++
Sbjct: 132 LDQV 135
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 85.8 bits (203), Expect = 2e-17
Identities = 34/63 (53%), Positives = 48/63 (76%)
Frame = +2
Query: 53 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 232
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 233 YIR 241
Y+R
Sbjct: 66 YLR 68
Score = 73.3 bits (172), Expect = 9e-14
Identities = 33/64 (51%), Positives = 43/64 (67%)
Frame = +3
Query: 252 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRX 431
GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+R
Sbjct: 72 GVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRD 131
Query: 432 LDRI 443
LD++
Sbjct: 132 LDQV 135
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 315 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRXLDRI 443
FCRSSG A + + ++ + + K +DG ++L RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 399 HRPELSQQASMPPTIAKPCVQYCLM 325
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 98 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 244
+H + V P D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 633
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 252 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVE--KVQDGGRILTTQGR 425
G + ++F G R+G PSHF +S A + LE K V ++ G +++ G
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301
Query: 426 RXLD 437
LD
Sbjct: 302 TLLD 305
>At4g20920.1 68417.m03032 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 870
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = -3
Query: 307 GVTPLRLRPPKILVTVLTPNR*ANVNMTKDGSTTHIEPIRVIRSQL 170
G T L L PK+L+ V TPN N N K G H + R + SQL
Sbjct: 738 GKTVLSLFRPKLLI-VSTPNIEYNTNFHKSGPPNHPKN-RSMSSQL 781
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 62 DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 178
+VE D+ V A K+T + + E VKT F+ELA
Sbjct: 30 NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 8 CFFFRLPTQGK-MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPE 136
C FF+ PT+ K +R T+ E+D K+ ++ L+ KV P+
Sbjct: 68 CTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPD 111
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 8 CFFFRLPTQGK-MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPE 136
C FF+ PT+ K +R T+ E+D K+ ++ L+ KV P+
Sbjct: 68 CTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPD 111
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 8 CFFFRLPTQGK-MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPE 136
C FF+ PT+ K +R T+ E+D K+ ++ L+ KV P+
Sbjct: 30 CTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPD 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,990
Number of Sequences: 28952
Number of extensions: 215374
Number of successful extensions: 526
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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