Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M13
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    30   0.30 
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    28   1.2  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    27   2.1  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   3.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   4.8  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   6.4  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.5  

>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = -1

Query: 548 YTSHVKFNFCKDEGIRCIKHGRVVGLLVGFDCILSRVDHPFVILHRIHXVDGYRFVLITE 369
           Y + +KF  C D+ I   ++   + + +G +  L +VD    +L + + + G R++ +T 
Sbjct: 114 YNNDLKFVDCADDAIAAFRNNGKIAIALGVEG-LHQVDTSLAVLRQYYSL-GVRYITLT- 170

Query: 368 MLVHHCFN 345
              H+C N
Sbjct: 171 ---HNCDN 175


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 144 WLSRFYLYDFRFIYSFNFVLCIFY-GPNVV 58
           W    ++ DFR  Y+F  + C+F  GP V+
Sbjct: 379 WFFSLFIKDFRLDYAFRILDCLFVNGPRVL 408


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 390 IPIDXVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNA-PDAFIFAKIEFNMTGIKQTRFM 566
           +P+  +YP    + +  TA+ A K   E+H+   F    + F F +    ++ +K+  ++
Sbjct: 392 VPVQEIYPTAPSEVLSSTADPAAKGKIESHYHGAFGGIEEVFTFTRCLSRLSEMKKQSWI 451

Query: 567 DS 572
            S
Sbjct: 452 HS 453


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 223 FMDLIVVIFLWAEVVLVKSKRKIVPAMV 140
           F+D +VVIFL      V+++R + PA V
Sbjct: 31  FLDYVVVIFLTVVAFCVRAQRLMNPAKV 58


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 592 SKDKRVKLSMNRVCFIPVMLN---SIFAKMKASGALNMVGWWVSWW 464
           S+  ++ L  +R  + P+ L+   SIFA+     A++  G++V +W
Sbjct: 24  SETSKIDLRRSRAAYRPLELSPTPSIFARNYQRNAVDFTGFFVLFW 69


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 296 FNLNFFCTCLSSCTFSGCVEYRSCVYGSNSCNIFVG*SGIGQKQTE 159
           F L F    +S     GC+   S +   N  ++F G SG+  K ++
Sbjct: 182 FRLGFLDALVSPVLLRGCILSISMIIMINQGSVFFGFSGVKYKGSD 227


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 488 HV*CT*CLHLCKN*I*HDWY 547
           H+ C  C H C N +  DW+
Sbjct: 547 HILCDYCKHKCSNIMEQDWF 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,694
Number of Sequences: 5004
Number of extensions: 48718
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)