Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M13
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049...    29   2.2  
07_01_0185 - 1313472-1313480,1313674-1313710,1314150-1314379,131...    29   2.2  
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112...    29   2.2  
08_02_0574 - 18867623-18868033,18869751-18870209                       29   3.8  
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    28   5.0  
06_01_0448 - 3162059-3162092,3162636-3162763,3163556-3163597,316...    28   5.0  
01_01_0355 + 2810340-2813112,2813213-2813637                           27   8.7  

>07_03_1698 +
           28803971-28804534,28804614-28804696,28804780-28804900,
           28804982-28805155,28805245-28805349,28805439-28805765
          Length = 457

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 452 ILSRVDHPFVILHRIHXVDGYRFVLITEML-VHHCFNYLSPSLIVRNE 312
           IL++VDHPFV+  R      YR  L+ + +   H F  L    + R E
Sbjct: 171 ILTKVDHPFVVQLRYSFQTKYRLYLVLDFINGGHLFFQLYKQGLFREE 218


>07_01_0185 -
           1313472-1313480,1313674-1313710,1314150-1314379,
           1314774-1314899,1315009-1315050,1315227-1315367
          Length = 194

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 226 QERYSTQPEKVQELRHVQKKFKLKSQKLVSFRT 324
           +E+   Q E+V+ +RH+Q  FK +  K   +RT
Sbjct: 93  REKSEDQRERVERIRHMQDMFKKERSKCRDYRT 125


>03_02_0909 -
           12310460-12310759,12310882-12310989,12311099-12311272,
           12311370-12311490,12311569-12311651,12311754-12312420,
           12314073-12314440
          Length = 606

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 452 ILSRVDHPFVILHRIHXVDGYRFVLITEML-VHHCFNYLSPSLIVRNE 312
           IL++VDHPFV+  R      YR  L+ + +   H F  L    + R E
Sbjct: 328 ILTKVDHPFVVQLRYSFQTKYRLYLVLDFINGGHLFFQLYQQGLFREE 375


>08_02_0574 - 18867623-18868033,18869751-18870209
          Length = 289

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 425 VILHRIHXVDGYRFVLITEMLVHHCFNYLSPSLIVRNETNFCDFNLNFFCTCL 267
           +I H  H     R V  T  +   C   L P    R   + C+F+++ FC+ L
Sbjct: 1   MITHHDHPQHKLRLVTTTCDMPFRCDGCLEPGYAPRYRCDACNFDMHTFCSNL 53


>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 517 KMKASGALNMVGWWVSWWAL 458
           + K + AL +V WW  WWA+
Sbjct: 6   RAKVAAALGVVVWWWWWWAV 25


>06_01_0448 -
           3162059-3162092,3162636-3162763,3163556-3163597,
           3163697-3163738,3163960-3164059,3164132-3164193,
           3165085-3165169,3168003-3168187
          Length = 225

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 266 SSCTFSGCVEYRSCVYGSNSC 204
           SSC +     YRSC Y  NSC
Sbjct: 60  SSCMYKTLERYRSCNYNLNSC 80


>01_01_0355 + 2810340-2813112,2813213-2813637
          Length = 1065

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 521 CKDEGIRCIKHGRVVGL-LVGFD 456
           C  EG+ C +HGRVV L L G D
Sbjct: 64  CSWEGVACGRHGRVVALSLPGHD 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,947
Number of Sequences: 37544
Number of extensions: 308143
Number of successful extensions: 729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)