Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M13
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   0.71 
SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   0.71 
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       29   3.8  
SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)           28   5.0  
SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)                     28   5.0  
SB_51669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_18308| Best HMM Match : TIL (HMM E-Value=4)                         27   8.8  

>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 287  NFFCTCLSSCTFSG--CVEYRSCVYGSNSCN 201
            NF+CTCL     +G  C +   C+ GS++C+
Sbjct: 1102 NFYCTCLPGYNGTGYVCSDINECLDGSHNCH 1132


>SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1027

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 287 NFFCTCLSSCTFSG--CVEYRSCVYGSNSCN 201
           NF+CTCL     +G  C +   C+ GS++C+
Sbjct: 516 NFYCTCLPGYNGTGYVCSDINECLDGSHNCH 546


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 287 NFFCTCLSSCTFSG--CVEYRSCVYGSNSCNI 198
           +F+CTC    + +G  C+E   C  G ++C++
Sbjct: 805 SFYCTCHKGYSGNGVACMELNECTLGLHNCHV 836


>SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)
          Length = 436

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +2

Query: 257 YKS*GTCKKNSS*SHKSWFHSAQSKREKGS*NSGEQAFQ**AQSDTHRXCVSYEVLQMGG 436
           +K   T K+NS   HKS  HS + K EK S    +  F      D H   ++ E   +GG
Sbjct: 81  FKPFKTEKENSPKRHKSSVHSTEGKAEKPSKRESKMEFS-PISRDLHNEKLTNEHGSVGG 139


>SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)
          Length = 589

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 323 VRNETNFCDFNLNFFCTCLSSCTFSGCVEYRS--CVYGSNSCNI 198
           VR+ +  CD N  F  T   S  F     Y+S  CVYGSNS N+
Sbjct: 405 VRHRSITCDTNGRFVVTSEPSSMF-----YKSSVCVYGSNSMNM 443


>SB_51669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 424 TNGWSTRLRMQSKPTRRPTT---RPCLMH-LMPSSLQKLNLT*LV*SRLDSWIVSLV 582
           T  WS+ L+  S+P  +P     +P L + ++PSSL + NL  +  S L S +V L+
Sbjct: 219 TRFWSSHLKRVSQPRLQPPNLPPKPTLPNIIVPSSLFRENLKTIFHSSLCSDVVFLI 275


>SB_18308| Best HMM Match : TIL (HMM E-Value=4)
          Length = 146

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 272 CLSSCTFSGCVEYRSCVY 219
           CL+ C   GC++Y+ C++
Sbjct: 123 CLTQCDEGGCMKYKQCMF 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,480,488
Number of Sequences: 59808
Number of extensions: 364972
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)