Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M11
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 62 1e-15
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.59
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po... 26 4.1
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.2
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 25 7.2
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 9.5
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 9.5
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.5
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.5
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 62.5 bits (145), Expect(2) = 1e-15
Identities = 29/107 (27%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Frame = +3
Query: 213 NARERXKHDNMAELYAVVCTLQHLXKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADE 392
+ + + ++++ LY+++ L+ L KA+ +D V ++ + C L+ Q++ F + +
Sbjct: 21 HTKNQQVREDLSILYSILVALEQLEKAFTKDAVSTSDFNSTCELLIQQWESCFSDERVTQ 80
Query: 393 -FPNIEAFVAKYRLXCPAALERIXENKPNLIXDDKGNTNKYIAEIVS 530
F + E F +KYRL CP A++RI E I D++ +N + +S
Sbjct: 81 AFGSFEDFCSKYRLQCPRAIKRIQEG----ISDERSQSNSTFSNAIS 123
Score = 35.9 bits (79), Expect(2) = 1e-15
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 507 KYIAEIVSLFITLMDKLRLXFRAMDMIQPELRDLRDTMDRLS 632
K IA +V FIT +D +RL F A D + P L +L +MD L+
Sbjct: 155 KSIAGLVQNFITTLDAIRLNFIAKDQLHPLLSELIVSMDDLT 196
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 426 CI*QQKLQYWETHQPVLV*KPLCTARGDDCMPPCIPVLAHNHACMP 289
C Q+K ++ + P P RG DC PC P+L H C P
Sbjct: 261 CGKQEKPEFVKNLVPHSCGDPCGKTRGQDCEHPC-PLLCHPGPCPP 305
>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -2
Query: 535 NNDTISAMYLLVFPLSSLMRFGLFSXIRSKAAGQXNLYLATKASILGNSS 386
+NDT S ++ PLS LFS +RSK + LYL T ++L S+
Sbjct: 217 SNDTQSCKLIVSLPLSQEECEVLFSLLRSK---KEPLYLNTLLALLVESN 263
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 368 SHFVLHEETTACRRVFLCSHTITHVCLLQVLKGTDDSIEL 249
S+F L++E CRR+ C+H C+ Q L + +S L
Sbjct: 530 SNFELNDE---CRRLKQCNHFFHRECIDQWLTSSQNSCPL 566
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 526 TISAMYLLVFPLSSLMRFGLFSXIRSKAAGQXNLYLATKASILGNSSACTCL 371
++SA + + ++ GLF I S A L S+LG S CT L
Sbjct: 17 SLSASQIQMLAFGGIIGTGLFLGIGSSLAESGPASLLISFSVLGVSVYCTML 68
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 463 RTNRISSXMTKGTLINTLQKLYRYL 537
++N ISS + LINT +K+YR++
Sbjct: 573 QSNLISSPYSYSRLINTNKKVYRHV 597
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 225 RXKHDNMAELYAVVCTLQHLXKAYMRDCVRAQEY 326
R H N+ LY VVCT + A M C + Y
Sbjct: 79 RLLHPNITRLYEVVCTEDRIYLA-MEYCPNGELY 111
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 73 YYFIIYKTRFLAVCFII*YCDCYKSVK 153
Y+FI + F + I+ C CY +VK
Sbjct: 398 YFFIKFDIYFTLIVLIMTLCYCYVTVK 424
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 559 VXSSVRWT*FSLNFVTFATPWTGS 630
V S+ + FS+ + F PWTGS
Sbjct: 192 VVVSLAYVSFSIIYALFLNPWTGS 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,275
Number of Sequences: 5004
Number of extensions: 45689
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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