Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M11
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21721| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   3e-31
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  

>SB_21721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score =  132 bits (318), Expect = 3e-31
 Identities = 68/128 (53%), Positives = 89/128 (69%)
 Frame = +3

Query: 270 TLQHLXKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLXCPAAL 449
           TLQ L KAY+RD V  +EYTAACS+LLVQYK AFK VQ+ ++P +EAF+ K+RL CPAAL
Sbjct: 3   TLQCLEKAYIRDAVTPREYTAACSKLLVQYKAAFKLVQSADYPTVEAFMKKFRLDCPAAL 62

Query: 450 ERIXENKPNLIXDDKGNTNKYIAEIVSLFITLMDKLRLXFRAMDMIQPELRDLRDTMDRL 629
           ER+ E +P  I DDKG+T+K IA+ VS                  +QP+LRDL DTM  +
Sbjct: 63  ERVKEGRPITIKDDKGSTSKAIADTVS------------------VQPDLRDLMDTMATM 104

Query: 630 SMLPDDFE 653
           ++LP+DF+
Sbjct: 105 AILPEDFD 112


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/89 (24%), Positives = 43/89 (48%)
 Frame = -2

Query: 562  RRSLSIRVINNDTISAMYLLVFPLSSLMRFGLFSXIRSKAAGQXNLYLATKASILGNSSA 383
            R  LS R ++ DTIS   L         +  +    R+  A + N+Y AT+A++   +  
Sbjct: 1747 RSVLSRRHMDADTISYCGLTRATRYKTAKTKVNHATRAIVATKANVYHATRATVATKAKV 1806

Query: 382  CTCLKATLYCTRRRLHAAVYSCARTQSRM 296
            C   +AT+  T+  ++ A  +   T++++
Sbjct: 1807 CHATRATV-ATKANVYHATRATVATKTKV 1834


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,125,841
Number of Sequences: 59808
Number of extensions: 368476
Number of successful extensions: 919
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)