Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M11
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050713-1|AAH50713.1|  233|Homo sapiens vacuolar protein sortin...   228   2e-59
BC019321-1|AAH19321.1|  221|Homo sapiens vacuolar protein sortin...   228   2e-59
BC006485-1|AAH06485.1|  221|Homo sapiens vacuolar protein sortin...   228   2e-59
AF316887-1|AAK00314.1|  221|Homo sapiens vacuolar sorting protei...   228   2e-59
AF182844-1|AAF00499.1|  221|Homo sapiens VPS28 protein protein.       228   2e-59

>BC050713-1|AAH50713.1|  233|Homo sapiens vacuolar protein sorting
           28 homolog (S. cerevisiae) protein.
          Length = 233

 Score =  228 bits (557), Expect = 2e-59
 Identities = 107/159 (67%), Positives = 129/159 (81%)
 Frame = +3

Query: 177 RPELYEEIKLYKNARERXKHDNMAELYAVVCTLQHLXKAYMRDCVRAQEYTAACSRLLVQ 356
           +PELYEE+KLYKNARER K+DNMAEL+AVV T+Q L KAY++DCV   EYTAACSRLLVQ
Sbjct: 17  KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQ 76

Query: 357 YKVAFKQVQADEFPNIEAFVAKYRLXCPAALERIXENKPNLIXDDKGNTNKYIAEIVSLF 536
           YK AF+QVQ  E  +I+ F  K+RL CP A+ERI E++P  I DDKGN N+ IA++VSLF
Sbjct: 77  YKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLF 136

Query: 537 ITLMDKLRLXFRAMDMIQPELRDLRDTMDRLSMLPDDFE 653
           IT+MDKLRL  RAMD IQP+LR+L +TM R+S LP DFE
Sbjct: 137 ITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFE 175


>BC019321-1|AAH19321.1|  221|Homo sapiens vacuolar protein sorting
           28 homolog (S. cerevisiae) protein.
          Length = 221

 Score =  228 bits (557), Expect = 2e-59
 Identities = 107/159 (67%), Positives = 129/159 (81%)
 Frame = +3

Query: 177 RPELYEEIKLYKNARERXKHDNMAELYAVVCTLQHLXKAYMRDCVRAQEYTAACSRLLVQ 356
           +PELYEE+KLYKNARER K+DNMAEL+AVV T+Q L KAY++DCV   EYTAACSRLLVQ
Sbjct: 17  KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQ 76

Query: 357 YKVAFKQVQADEFPNIEAFVAKYRLXCPAALERIXENKPNLIXDDKGNTNKYIAEIVSLF 536
           YK AF+QVQ  E  +I+ F  K+RL CP A+ERI E++P  I DDKGN N+ IA++VSLF
Sbjct: 77  YKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLF 136

Query: 537 ITLMDKLRLXFRAMDMIQPELRDLRDTMDRLSMLPDDFE 653
           IT+MDKLRL  RAMD IQP+LR+L +TM R+S LP DFE
Sbjct: 137 ITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFE 175


>BC006485-1|AAH06485.1|  221|Homo sapiens vacuolar protein sorting
           28 homolog (S. cerevisiae) protein.
          Length = 221

 Score =  228 bits (557), Expect = 2e-59
 Identities = 107/159 (67%), Positives = 129/159 (81%)
 Frame = +3

Query: 177 RPELYEEIKLYKNARERXKHDNMAELYAVVCTLQHLXKAYMRDCVRAQEYTAACSRLLVQ 356
           +PELYEE+KLYKNARER K+DNMAEL+AVV T+Q L KAY++DCV   EYTAACSRLLVQ
Sbjct: 17  KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQ 76

Query: 357 YKVAFKQVQADEFPNIEAFVAKYRLXCPAALERIXENKPNLIXDDKGNTNKYIAEIVSLF 536
           YK AF+QVQ  E  +I+ F  K+RL CP A+ERI E++P  I DDKGN N+ IA++VSLF
Sbjct: 77  YKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLF 136

Query: 537 ITLMDKLRLXFRAMDMIQPELRDLRDTMDRLSMLPDDFE 653
           IT+MDKLRL  RAMD IQP+LR+L +TM R+S LP DFE
Sbjct: 137 ITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFE 175


>AF316887-1|AAK00314.1|  221|Homo sapiens vacuolar sorting protein
           28 protein.
          Length = 221

 Score =  228 bits (557), Expect = 2e-59
 Identities = 107/159 (67%), Positives = 129/159 (81%)
 Frame = +3

Query: 177 RPELYEEIKLYKNARERXKHDNMAELYAVVCTLQHLXKAYMRDCVRAQEYTAACSRLLVQ 356
           +PELYEE+KLYKNARER K+DNMAEL+AVV T+Q L KAY++DCV   EYTAACSRLLVQ
Sbjct: 17  KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQ 76

Query: 357 YKVAFKQVQADEFPNIEAFVAKYRLXCPAALERIXENKPNLIXDDKGNTNKYIAEIVSLF 536
           YK AF+QVQ  E  +I+ F  K+RL CP A+ERI E++P  I DDKGN N+ IA++VSLF
Sbjct: 77  YKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLF 136

Query: 537 ITLMDKLRLXFRAMDMIQPELRDLRDTMDRLSMLPDDFE 653
           IT+MDKLRL  RAMD IQP+LR+L +TM R+S LP DFE
Sbjct: 137 ITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFE 175


>AF182844-1|AAF00499.1|  221|Homo sapiens VPS28 protein protein.
          Length = 221

 Score =  228 bits (557), Expect = 2e-59
 Identities = 107/159 (67%), Positives = 129/159 (81%)
 Frame = +3

Query: 177 RPELYEEIKLYKNARERXKHDNMAELYAVVCTLQHLXKAYMRDCVRAQEYTAACSRLLVQ 356
           +PELYEE+KLYKNARER K+DNMAEL+AVV T+Q L KAY++DCV   EYTAACSRLLVQ
Sbjct: 17  KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQ 76

Query: 357 YKVAFKQVQADEFPNIEAFVAKYRLXCPAALERIXENKPNLIXDDKGNTNKYIAEIVSLF 536
           YK AF+QVQ  E  +I+ F  K+RL CP A+ERI E++P  I DDKGN N+ IA++VSLF
Sbjct: 77  YKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLF 136

Query: 537 ITLMDKLRLXFRAMDMIQPELRDLRDTMDRLSMLPDDFE 653
           IT+MDKLRL  RAMD IQP+LR+L +TM R+S LP DFE
Sbjct: 137 ITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFE 175


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,091,756
Number of Sequences: 237096
Number of extensions: 1555129
Number of successful extensions: 7328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7328
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)