Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M10
(469 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal pro... 187 3e-48
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 29 1.7
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 29 1.7
Z81528-7|CAB04286.1| 259|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 27 5.1
AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 27 5.1
U40060-5|AAA81143.2| 690|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 27 8.9
>AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 22 protein.
Length = 130
Score = 187 bits (456), Expect = 3e-48
Identities = 89/113 (78%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Frame = +3
Query: 102 KSEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISP 281
+ GK + PASKVIV+FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNK VISP
Sbjct: 18 EKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISP 77
Query: 282 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEAXRKHLGGKILGFFF 437
R ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEA RKHLGGKILGFFF
Sbjct: 78 RLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/28 (82%), Positives = 27/28 (96%)
Frame = +2
Query: 53 LRMNVLSDALKSIHNAEKRGKRQVLIRP 136
+RMNVL+DAL +I+NAEKRGKRQVLIRP
Sbjct: 2 VRMNVLADALNAINNAEKRGKRQVLIRP 29
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 120 KSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 236
+SSSGP++ F+T + GY F VD +G I+
Sbjct: 2687 QSSSGPSASCNTGFVTAVSTPGYTSGFMTVDTTTSGSIM 2725
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 120 KSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 236
+SSSGP++ F+T + GY F VD +G I+
Sbjct: 2687 QSSSGPSASCNTGFVTAVSTPGYTSGFMTVDTTTSGSIM 2725
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 120 KSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 236
+SSSGP++ F+T + GY F VD +G I+
Sbjct: 2687 QSSSGPSASCNTGFVTAVSTPGYTSGFMTVDTTTSGSIM 2725
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 120 KSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 236
+SSSGP++ F+T + GY F VD +G I+
Sbjct: 2687 QSSSGPSASCNTGFVTAVSTPGYTSGFMTVDTTTSGSIM 2725
>Z81528-7|CAB04286.1| 259|Caenorhabditis elegans Hypothetical
protein F35E2.8 protein.
Length = 259
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 129 MRTCLFPRFSALCIDFKASLNTFIRSHG*DLA 34
MR C P A+CI+ K S + F H DLA
Sbjct: 51 MRICEHPAAIAVCINSKTSQSRFELRHNLDLA 82
>Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical
protein F17B5.6 protein.
Length = 363
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = +2
Query: 335 TTVWL-PSPYNKWW 373
T +WL P PYN WW
Sbjct: 29 TVIWLIPRPYNYWW 42
>AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical
protein C36E6.1b protein.
Length = 641
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 204 IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 323
+VD KI + + NKCG I + + + WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187
>U40060-5|AAA81143.2| 690|Caenorhabditis elegans Hypothetical
protein F38B6.6 protein.
Length = 690
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 50 WLRMNVLSDALKSIHNAEKRGKRQVLIRP 136
W+ + + LK + AEK K +LIRP
Sbjct: 503 WMNLGISQMNLKKYYEAEKSLKNSLLIRP 531
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 172 ITVKNLTMTLEAGPDEDLSFPS 107
IT+ N+T T +A P ED+ PS
Sbjct: 1587 ITIGNITHTWDAKPFEDIKMPS 1608
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,674,043
Number of Sequences: 27780
Number of extensions: 180306
Number of successful extensions: 365
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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