Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M10
(469 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 177 4e-45
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 177 4e-45
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 177 4e-45
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 175 1e-44
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 172 1e-43
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 113 6e-26
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 112 1e-25
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi... 29 2.1
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ... 27 4.8
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy... 27 6.3
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 177 bits (430), Expect = 4e-45
Identities = 82/113 (72%), Positives = 94/113 (83%), Gaps = 1/113 (0%)
Frame = +3
Query: 102 KSEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISP 281
+ GK + P+SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISP
Sbjct: 18 EKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISP 77
Query: 282 RFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEAXRKHLGGKILGFFF 437
RFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEA RK++GGK+LGFF+
Sbjct: 78 RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/28 (75%), Positives = 28/28 (100%)
Frame = +2
Query: 53 LRMNVLSDALKSIHNAEKRGKRQVLIRP 136
+R++VL+DALKS++NAEKRGKRQV+IRP
Sbjct: 2 VRISVLNDALKSMYNAEKRGKRQVMIRP 29
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 177 bits (430), Expect = 4e-45
Identities = 82/113 (72%), Positives = 94/113 (83%), Gaps = 1/113 (0%)
Frame = +3
Query: 102 KSEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISP 281
+ GK + P+SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISP
Sbjct: 18 EKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISP 77
Query: 282 RFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEAXRKHLGGKILGFFF 437
RFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEA RK++GGK+LGFF+
Sbjct: 78 RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/28 (75%), Positives = 28/28 (100%)
Frame = +2
Query: 53 LRMNVLSDALKSIHNAEKRGKRQVLIRP 136
+R++VL+DALKS++NAEKRGKRQV+IRP
Sbjct: 2 VRISVLNDALKSMYNAEKRGKRQVMIRP 29
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 177 bits (430), Expect = 4e-45
Identities = 82/113 (72%), Positives = 94/113 (83%), Gaps = 1/113 (0%)
Frame = +3
Query: 102 KSEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISP 281
+ GK + P+SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISP
Sbjct: 18 EKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISP 77
Query: 282 RFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEAXRKHLGGKILGFFF 437
RFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEA RK++GGK+LGFF+
Sbjct: 78 RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/28 (75%), Positives = 28/28 (100%)
Frame = +2
Query: 53 LRMNVLSDALKSIHNAEKRGKRQVLIRP 136
+R++VL+DALKS++NAEKRGKRQV+IRP
Sbjct: 2 VRISVLNDALKSMYNAEKRGKRQVMIRP 29
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 175 bits (426), Expect = 1e-44
Identities = 81/113 (71%), Positives = 94/113 (83%), Gaps = 1/113 (0%)
Frame = +3
Query: 102 KSEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISP 281
+ GK + P+SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISP
Sbjct: 18 EKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISP 77
Query: 282 RFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEAXRKHLGGKILGFFF 437
RFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEA RK++GGK+LGFF+
Sbjct: 78 RFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/28 (71%), Positives = 27/28 (96%)
Frame = +2
Query: 53 LRMNVLSDALKSIHNAEKRGKRQVLIRP 136
+R++VL+D LKS++NAEKRGKRQV+IRP
Sbjct: 2 VRISVLNDGLKSMYNAEKRGKRQVMIRP 29
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 172 bits (418), Expect = 1e-43
Identities = 78/113 (69%), Positives = 94/113 (83%), Gaps = 1/113 (0%)
Frame = +3
Query: 102 KSEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISP 281
+ +GK + P+SKVI+KFLTVM KHGYI EFE VDDHR+GKIVV L GRLN CGVISP
Sbjct: 24 EKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISP 83
Query: 282 RFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEAXRKHLGGKILGFFF 437
R+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHEEA +K++GGK+LGFF+
Sbjct: 84 RYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136
Score = 43.6 bits (98), Expect = 7e-05
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +2
Query: 53 LRMNVLSDALKSIHNAEKRGKRQVLIRP 136
+R +VL+D LKS+ NAEK+GKRQV+IRP
Sbjct: 8 VRASVLNDCLKSMSNAEKQGKRQVMIRP 35
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 113 bits (272), Expect = 6e-26
Identities = 51/110 (46%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
Frame = +3
Query: 111 GKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFD 290
GK P S V+ FL +M + GYI F++ D HR G+I V+L GR+N C ++ R D
Sbjct: 20 GKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQD 79
Query: 291 VPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEAXRKHLGGKILGFFF 437
V +IE++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++LGFF+
Sbjct: 80 VRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 65 VLSDALKSIHNAEKRGKRQVLIRP 136
+L+DAL++I NAE+RGK V ++P
Sbjct: 5 ILNDALRTIVNAERRGKASVELKP 28
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 112 bits (269), Expect = 1e-25
Identities = 51/112 (45%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Frame = +3
Query: 102 KSEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISP 281
+ GK P S V+ FL +M + GYI F++ D HR G+I V+L GR+N C ++
Sbjct: 17 EKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTY 76
Query: 282 RFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEAXRKHLGGKILGFF 434
R DV N+I ++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++LGFF
Sbjct: 77 RQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128
Score = 33.5 bits (73), Expect = 0.073
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 65 VLSDALKSIHNAEKRGKRQVLIRP 136
+L+DAL++I NAEKRGK V ++P
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKP 28
>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
histidine--tRNA ligase, putative similar to SP|P12081
Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
PF00587: tRNA synthetase class II core domain (G, H, P,
S and T), PF03129: Anticodon binding domain
Length = 479
Score = 28.7 bits (61), Expect = 2.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 150 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 314
IVK LT ++ IG++E+ +HR K+ L G L CGV +F + I++
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKFRTICSSIDK 224
>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
Pfam profile PF00018: SH3 domain
Length = 1196
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 105 SEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHR 221
S G+D+ +SG V++ + ++ Y+G+ E++ D R
Sbjct: 827 SNGEDQGASGTGLGVLITPMLKVLDEMYVGQDELIKDIR 865
>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
conatins Pfam profile: PF00067 cytochrome P450
Length = 407
Score = 27.1 bits (57), Expect = 6.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 141 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN----LTGRLNKCGVISPRFDVPINDI 308
S +I L ++ K IG F+I DH G + V+ LTG L + + S + + D+
Sbjct: 195 SNLISAMLNMINKPTNIGSFKITSDHLKGVMSVSVYDFLTGTLIRATLGSNKERITEEDL 254
Query: 309 ER 314
E+
Sbjct: 255 EK 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,240,744
Number of Sequences: 28952
Number of extensions: 173554
Number of successful extensions: 336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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