Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M09
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    29   0.043
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.40 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.1  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   2.1  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   8.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 0.043
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 328 LKQYPIPALHPNLYDNIMVSISAAARTNQIY---VVVNGRELMDCTKNDTGEPCPELKEY 498
           +  +    L P+L +N+  S        Q Y   V+++GR+LM C +  +G+    +   
Sbjct: 157 ITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPI 216

Query: 499 IFNTNVVFDRN 531
           I   N++ D+N
Sbjct: 217 IH--NLLSDKN 225


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
 Frame = +1

Query: 94  CLLFVSLTKTSFQK---STPQDSQYVAAAVEYIVSGDVDQNIRNYV--RYIEEAAKQNAD 258
           CL  + L KTSF+K   S+ Q+     +A   ++  D    +  +V   Y ++  +    
Sbjct: 299 CLRAIVLFKTSFEKPSSSSNQEKTTTESAKISVIQDDAQMRLNKHVTTTYPKQPLRFGKI 358

Query: 259 IIVFPEL--TLTNRSTSFVAPLHGILKQYPIPALHPNLYDN 375
           +++      T++ R+   +     +++  PI A+  N+Y N
Sbjct: 359 LLLVSSTFRTISGRTIEDLF-FKKVIRDTPIVAIISNMYKN 398


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 557 LRYRSITAPFLSNTTFVLKI 498
           L + S+  P LSN TFV+ +
Sbjct: 554 LYFMSLLNPILSNVTFVIDV 573


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 557 LRYRSITAPFLSNTTFVLKI 498
           L + S+  P LSN TFV+ +
Sbjct: 279 LYFMSLLNPILSNVTFVIDV 298


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 258 HHSFPRTDPDQQKHKFCSAVT 320
           H + P   P+QQ  K CS+ T
Sbjct: 31  HGATPPQSPNQQYTKDCSSPT 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,718
Number of Sequences: 336
Number of extensions: 2897
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)