Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M09
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    33   0.046
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    30   0.33 
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    30   0.33 
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      29   0.75 
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   4.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.0  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   4.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.3  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   9.3  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   9.3  

>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 32.7 bits (71), Expect = 0.046
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
 Frame = +1

Query: 109 SLTKTSFQKSTPQDSQ-YVAAAVEYIVSGDVDQNIRNYVRYIEEAAKQNADIIVFPELTL 285
           ++   S     P+D + +    V+   + D  +N++     + EAAK  +++IV PE+  
Sbjct: 27  NIMSVSASSLVPKDFRAFRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFN 86

Query: 286 TNRSTSFVAPLHGILKQY--PIPALHPNLYDNIMVSISAAARTNQIYVVVNGRELMDCTK 459
           +   T       G   QY  PI    P+       ++S+ A+  + Y+            
Sbjct: 87  SPYGT-------GYFNQYAEPIEESSPSYQ-----ALSSMAKDTKTYLF----------- 123

Query: 460 NDTGEPCPELKE-YIFNTNVVFDRNGAVIDRYRKINLF 570
              G   PE K+  ++NT +VFD +G +I  +RKI+LF
Sbjct: 124 ---GGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLF 158


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +1

Query: 328 LKQYPIPALHPNLYDNIMVS---ISAAARTNQIYVVVNGRELMDCTKNDTGEPCPELKEY 498
           + ++  P L+ +L  NI +S        + N I +V +GR+LM C +  +G+    L   
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227

Query: 499 IFNTNVVFDRNGAVI 543
           +   ++ FD+  A +
Sbjct: 228 L---SLAFDKGPAAV 239


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 286 TNRSTSFVAPLHGILKQYP--IPALHPNLYDNIMVSISAAARTNQIYV 423
           T  +T++++ L G+    P  IP++ P  +DN   ++ + +RT  +Y+
Sbjct: 253 TKENTNYLSQLVGLHPAIPPAIPSMFPMSHDNKKSNMESTSRTRNVYI 300


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 499 IFNTNVVFDRNGAVIDRYRKINLFGESSHTPALTPDLGYFETDFG 633
           I+N+ +    NG +   YRK++LF           D   FET FG
Sbjct: 99  IYNSCIYITENGNLGGVYRKVHLFDTERKHFKKGSDFPIFETSFG 143


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 193 DVDQNIRNYVRYIEEAAKQNADIIVFPELTLT 288
           D + N    +  I+EA +QNA + V PEL +T
Sbjct: 18  DFEGNRLRIIDSIKEAKRQNASLRVGPELEVT 49


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 421 VVVNGRELMDCTKNDTG 471
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 421 VVVNGRELMDCTKNDTG 471
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +1

Query: 301 SFVAPLHGILKQYPIPALHPNLYDNIMVSI 390
           +F+ P   +L+  P+  +HPN+Y  +++ +
Sbjct: 645 NFLKPSEALLQHLPL--IHPNIYGEVVIEV 672


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 301 SFVAPLHGILKQYPIPALHPNLYDNIMVSISAAARTNQIYVVVNGRELMD 450
           S  AP HGI+  +    L  NL    +       R+ Q Y + + RE+ D
Sbjct: 524 SNTAPAHGIISIFTSLILFQNLVPISLYITMDIVRSIQSYFIFSDREMYD 573


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -2

Query: 641 NLTPKSVSK*PKSGVRAGVCELSPKRLILRYRSITAPFLSNTTFVLKIYSFSSGQGSP 468
           N +PKS +  P    ++G+ E    R    Y S ++P++ +  F+ ++ +  S  GSP
Sbjct: 689 NKSPKSSTMVPLMKYKSGLNE--GMRTSSIYSSTSSPYIRDQYFLNRMLTNGSHNGSP 744


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 100 LFVSLTKTSFQKSTPQDSQYVAAAVEYIVSGDVDQNIR 213
           L  +L   S ++  P+ + + A     IVSGD+  N++
Sbjct: 56  LLFTLANASLKQKDPKSNAHEAFIASKIVSGDLKTNLQ 93


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -1

Query: 564 IDLAIPINNRSVPIKHNVCIKDILL----QLRTRFAGV 463
           +DLA+   N+S+ ++  VC++D ++    Q R RFA +
Sbjct: 366 MDLAVSYVNQSLNVQALVCLEDWIVNSFPQYRNRFAKI 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,327
Number of Sequences: 5004
Number of extensions: 49270
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)