Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M09
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             72   5e-13
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_36933| Best HMM Match : TNFR_c6 (HMM E-Value=0.93)                  28   7.4  
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)            28   7.4  
SB_2623| Best HMM Match : Fumarate_red_C (HMM E-Value=2.7)             27   9.8  
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          27   9.8  
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 27   9.8  

>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
 Frame = +1

Query: 205 NIRNYVRYIEEAAKQNADIIVFPELTL------TNRSTSFVAPLHGILKQYPI-PALHPN 363
           N++ Y +   EAA + A IIVFPE  +       +R   F+  +  +    P  P   P 
Sbjct: 338 NLKVYEQKAIEAASKGAQIIVFPEDGIYGMGYTRDRIRPFLEAVPEVRHDKPWNPCRQPK 397

Query: 364 LYDNIMVSISAAARTNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTNVVFDRNGAVI 543
            Y  ++  +S  A  N I VV N  ++  C + D    CPE   Y FNT+VVFD +G  I
Sbjct: 398 DYVEVLQFLSCMAFNNSIAVVANMGDIQYCDEKD--RHCPEDGHYQFNTDVVFDTDGTFI 455

Query: 544 DRYRKINLFGESSHTPALTPDLGYFETDFGVKF 642
            +Y K NLF E++     + +   F T F V F
Sbjct: 456 AKYHKQNLFHETAFDTPPSCEYVTFVTSFNVTF 488


>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
 Frame = +1

Query: 73   IMKGFIFCLLFVSLTKTSFQKSTPQDSQYVAAAVEYI-------------VSGDVDQNIR 213
            + + F+     ++L   S  KS P+ S+++AA  E++               G + +NI 
Sbjct: 848  MFRWFVAKFSLLALVIISHIKSVPE-SEFIAAVYEHVPPLNRPKEITRANALGIMMRNID 906

Query: 214  NYVRYIEEAAKQNADIIVFPELTLT--NRSTS-FVAPLHGI--LKQYPIPALHP--NLYD 372
             Y   +  A  +N+ IIVFPE  LT  N++ S F   L  I   K    P L P  N   
Sbjct: 907  TYEEQMVIARDKNSSIIVFPEYGLTGWNQTRSVFKHFLENIPDPKISSNPCLDPGINKTT 966

Query: 373  NIMVSISAAARTNQIYVVVNGRELMDCTKNDTGEP-CPELKEYIFNTNVV 519
             I+  +S  AR   +Y+VVN  ++  C K    +P CP    Y +NTNVV
Sbjct: 967  PILYRLSCLARKYAMYLVVNMGDIKPCQK--ASDPHCPGDGRYQYNTNVV 1014


>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 268 FPELTLTNRSTSFVAPLHGILKQYPIPALHPNLYDNIMVSISAAARTNQIYVVVN-GREL 444
           +P+   T  ST  +AP   +   YP+P + P +      +  ++  +++I V +  G E+
Sbjct: 646 YPDGRETTVSTKHLAPKGEVPTMYPLPQVKPTVPGEHHPATGSSPPSSEIEVEIGVGEEV 705

Query: 445 MDCTKNDTGEPCPELKEYIF 504
              +K D+   C   KE I+
Sbjct: 706 PQVSKGDSHVICDVTKEVIY 725


>SB_36933| Best HMM Match : TNFR_c6 (HMM E-Value=0.93)
          Length = 524

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +3

Query: 282 PDQQKHKFCSAVTW--YFKTIP 341
           PDQQ+H+FC   +W  Y K +P
Sbjct: 391 PDQQRHQFCPMNSWCKYKKGLP 412


>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
          Length = 416

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +3

Query: 282 PDQQKHKFCSAVTW 323
           PD+++H+FCSA +W
Sbjct: 223 PDKERHQFCSANSW 236


>SB_2623| Best HMM Match : Fumarate_red_C (HMM E-Value=2.7)
          Length = 202

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 391 SAAARTNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTNVVFD 525
           +A AR    Y++ NG E  D  K   GE     +E + + +V FD
Sbjct: 36  NAIARDIPTYLLTNGSEFDDIEKMTEGERKTFFRENVASLDVYFD 80


>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/24 (37%), Positives = 20/24 (83%)
 Frame = +1

Query: 499 IFNTNVVFDRNGAVIDRYRKINLF 570
           ++NT++ +D +G ++ ++RKI+LF
Sbjct: 52  LYNTSLSYDPSGNLMGKHRKIHLF 75


>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/24 (37%), Positives = 20/24 (83%)
 Frame = +1

Query: 499 IFNTNVVFDRNGAVIDRYRKINLF 570
           ++NT++ +D +G ++ ++RKI+LF
Sbjct: 96  LYNTSLSYDPSGNLMGKHRKIHLF 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,733,400
Number of Sequences: 59808
Number of extensions: 379887
Number of successful extensions: 972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)