Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M09
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08790.1 68417.m01448 nitrilase, putative similar to nitrilas...    34   0.070
At1g07550.1 68414.m00808 leucine-rich repeat protein kinase, put...    33   0.16 
At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak ...    31   0.65 
At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P329...    31   0.86 
At5g05140.1 68418.m00545 transcription elongation factor-related...    30   1.1  
At1g77220.1 68414.m08994 expressed protein contains Pfam profile...    29   2.0  
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei...    29   3.5  
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei...    29   3.5  
At4g23750.2 68417.m03417 AP2 domain-containing transcription fac...    29   3.5  
At4g23750.1 68417.m03416 AP2 domain-containing transcription fac...    29   3.5  
At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,...    29   3.5  
At1g64160.1 68414.m07268 disease resistance-responsive family pr...    29   3.5  
At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...    28   4.6  

>At4g08790.1 68417.m01448 nitrilase, putative similar to nitrilase 1
           [Mus musculus] GI:3228668; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 307

 Score = 34.3 bits (75), Expect = 0.070
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
 Frame = +1

Query: 100 LFVSLTKTS---FQKSTPQDSQYVAAAVEYIVSGDVDQNIRNYVRYIEEAAKQNADIIVF 270
           LF  +T +S      +T  +     AA +     D+  N     R ++EAA   A +I F
Sbjct: 15  LFTRITLSSQIPLTMATTVNKTVRVAAAQMTSVNDLMTNFATCSRLVQEAALAGAKLICF 74

Query: 271 PELTLTNRSTSFVAPLHGILKQYPIPALHPNLYDNIMVSISAAARTNQIYVVVNG-RELM 447
           PE      + SFV    G   +   P   P     +M    + AR + I++ + G +E  
Sbjct: 75  PE------NFSFVGDKEGESVKIAEPLDGP-----VMERYCSLARDSNIWLSLGGFQERF 123

Query: 448 DCTKNDTGEPCPELKEYIFNTNVVFDRNGAVIDRYRKINLF 570
           D T             ++ NT+VV D  G + D Y+K++LF
Sbjct: 124 DDT-------------HLCNTHVVIDDAGMIRDTYQKMHLF 151


>At1g07550.1 68414.m00808 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 864

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
 Frame = +1

Query: 214 NYVRYIEEAAKQNADIIVFPELTLTNRSTSFVAPLHGILKQYPI---PALHPNLYDNIMV 384
           NY+RY ++   +    ++ PE T  N S   +  + G      +    A+  N  D + +
Sbjct: 204 NYIRYPQDVHDRIWVPLILPEWTHINTSHHVIDSIDGYDPPQDVLRTGAMPANASDPMTI 263

Query: 385 SISAAARTNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTNVVFD 525
           + +    T+Q+Y  +   E+M+   N+T E      E + N  V FD
Sbjct: 264 TWNLKTATDQVYGYIYIAEIMEVQANETRE-----FEVVVNNKVHFD 305


>At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak
           similarity to long chain polyunsaturated fatty acid
           elongation enzyme [Isochrysis galbana] GI:17226123;
           contains Pfam profile PF01151: GNS1/SUR4 family
          Length = 289

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 555 AIPINNRSVPIKHNVCIKDILLQL--RTRFAGVILSAVHEL 439
           A+  +NRSVP+ H   I  +L+ +   T FAG++LSA  E+
Sbjct: 57  AVRRSNRSVPLGHIPEIHSLLMSILSATIFAGILLSAAAEI 97


>At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P32961
           Nitrilase 1 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 346

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 121 TSFQKSTPQDSQYVAAAVEYIVSGDVDQNIRNYVRYIEEAAKQNADIIVFPE 276
           T F    P  +  V       V  D    I    +YI EAA + A++++FPE
Sbjct: 14  TPFNGVAPSTTVRVTIVQSSTVYNDTPATIDKAEKYIVEAASKGAELVLFPE 65


>At5g05140.1 68418.m00545 transcription elongation factor-related
           low similarity to transcription elongation factor
           TFIIS.h [Mus musculus] GI:3288547, elongin A [Mus
           musculus] GI:6009624
          Length = 436

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -1

Query: 579 TFPEKIDLAIPINNRSVPIKHNVCIKDILLQLRTRFAGVILSAVHELSAIDHNVDLISS 403
           TF E   L+  I   SV  K    IK+ILL        V+L ++  L  +  NVD++ S
Sbjct: 120 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKS 178


>At1g77220.1 68414.m08994 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 484

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 268 FPELTLTNRSTSFVAPLHGILKQYPIPALHPNLYDNIMVSISAAARTNQ 414
           F +   T +  S+V PL+   K++    +H NLYD   VS S    TN+
Sbjct: 423 FEQQKKTTKDDSYVIPLNQWAKEFS--DVHENLYDGGSVSDSGLGSTNR 469


>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 294

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 184 VSGDVDQNIRNYVRYIEEAAKQNADIIVFPEL 279
           V+ D  +NI +  + IEEAA + A +++ PE+
Sbjct: 97  VTSDKKRNISHAKKAIEEAASKGAKLVLLPEI 128


>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 369

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 184 VSGDVDQNIRNYVRYIEEAAKQNADIIVFPEL 279
           V+ D  +NI +  + IEEAA + A +++ PE+
Sbjct: 97  VTSDKKRNISHAKKAIEEAASKGAKLVLLPEI 128


>At4g23750.2 68417.m03417 AP2 domain-containing transcription
           factor, putative DNA-binding protein Pti6 - Lycopersicon
           esculentum,PID:g2213785
          Length = 343

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 499 IFNTNVVFDRNGAVIDRYRKINLFGESSHTPALTPDLGYFETDFG 633
           +F+ + VFD   +V+  Y   +LFGE   T  +  D+  F  DFG
Sbjct: 273 LFSDDDVFDFRSSVVPDYLGGDLFGEDLFTADMCTDMN-FGFDFG 316


>At4g23750.1 68417.m03416 AP2 domain-containing transcription
           factor, putative DNA-binding protein Pti6 - Lycopersicon
           esculentum,PID:g2213785
          Length = 343

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 499 IFNTNVVFDRNGAVIDRYRKINLFGESSHTPALTPDLGYFETDFG 633
           +F+ + VFD   +V+  Y   +LFGE   T  +  D+  F  DFG
Sbjct: 273 LFSDDDVFDFRSSVVPDYLGGDLFGEDLFTADMCTDMN-FGFDFG 316


>At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,
           putative similar to Beta-galactosidase precursor
           SP:P48980 from [Lycopersicon esculentum]
          Length = 852

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 511 NVVFDRNGAVIDRYRKINLFGESSHTPALTPDL 609
           NV +D    VID  RK+ + G S H P  TP++
Sbjct: 31  NVTYDHRALVIDGKRKVLISG-SIHYPRSTPEM 62


>At1g64160.1 68414.m07268 disease resistance-responsive family
           protein / dirigent family protein similar to dirigent
           protein GB:AAF25365 GI:6694709 from [Thuja plicata];
           similar to pathogenesis-related protein [Pisum sativum]
           gi:4585273 gb:AAD25355
          Length = 182

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 70  GIMKGFIFCLLFVSLTKTSFQKSTPQDSQ 156
           G MK F+F  +F+ LTKT      P  SQ
Sbjct: 3   GQMKSFLFLFVFLVLTKTVISARKPSKSQ 31


>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
 Frame = +1

Query: 493 EYIFNTNVVFDRNGAVIDRYRKINL-----FGESSHTPALTPDLGY--FETDFG 633
           E ++NT V+   NG +I ++RK ++     F ES++   +  D G+  FET FG
Sbjct: 191 EVLWNTAVIIGNNGNIIGKHRKNHIPRVGDFNESTY--YMEGDTGHPVFETVFG 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,951,590
Number of Sequences: 28952
Number of extensions: 252373
Number of successful extensions: 697
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)