Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M08
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   4.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 342 NLQICSKFYVWQYSLKQHVFQFCMS*QFSLSCYH 241
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 82  SLRTPSNLFVINLAISNFLMMFCMSPPMVINCYY 115


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 342 NLQICSKFYVWQYSLKQHVFQFCMS*QFSLSCYH 241
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 48  SLRTPSNLFVINLAISDFLMMFCMSPPMVINCYY 81


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 168 QGVLPPPSEVVENGLKIVTEYKY 236
           QGV    S  + N LK++ E+KY
Sbjct: 15  QGVTDIHSRNLTNSLKVIYEWKY 37


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 336 QICSKFYVWQYSLKQHVFQFCMS*QFSLSCYHC-RIY 229
           Q+C K    + SLK+HV       Q    C  C R+Y
Sbjct: 9   QLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVY 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,153
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)