Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M05
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.31 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    24   0.94 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   0.94 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   0.94 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   0.94 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   0.94 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   0.94 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   0.94 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   0.94 

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 100 SSVLTAELVAGGFDEPPPLSRA---SMMRPGHLVF 5
           S+  TAEL  GG  EPP +  A     ++PG+ VF
Sbjct: 398 SAEATAELKLGGRFEPPQIRHAFNEETVQPGNSVF 432


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 219 CGHSSPGCSSLIRGELRTTVRAAKNNTT 136
           C   SPGC SL RG+        K  TT
Sbjct: 223 CVLCSPGCFSLFRGKALMDKSVMKKYTT 250


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 219 CGHSSPGCSSLIRGELRTTVRAAKNNTT 136
           C   SPGC SL RG+        K  TT
Sbjct: 537 CVLCSPGCFSLFRGKALMDKSVMKKYTT 564


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 219 CGHSSPGCSSLIRGELRTTVRAAKNNTT 136
           C   SPGC SL RG+        K  TT
Sbjct: 797 CVLCSPGCFSLFRGKALMDDNVMKKYTT 824


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 219 CGHSSPGCSSLIRGELRTTVRAAKNNTT 136
           C   SPGC SL RG+        K  TT
Sbjct: 797 CVLCSPGCFSLFRGKALMDDNVMKKYTT 824


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 219 CGHSSPGCSSLIRGELRTTVRAAKNNTT 136
           C   SPGC SL RG+        K  TT
Sbjct: 770 CVLCSPGCFSLFRGKALMDKSVMKKYTT 797


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 219 CGHSSPGCSSLIRGELRTTVRAAKNNTT 136
           C   SPGC SL RG+        K  TT
Sbjct: 770 CVLCSPGCFSLFRGKALMDKSVMKKYTT 797


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 219 CGHSSPGCSSLIRGELRTTVRAAKNNTT 136
           C   SPGC SL RG+        K  TT
Sbjct: 797 CVLCSPGCFSLFRGKALMDDNVMKKYTT 824


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 219 CGHSSPGCSSLIRGELRTTVRAAKNNTT 136
           C   SPGC SL RG+        K  TT
Sbjct: 797 CVLCSPGCFSLFRGKALMDDNVMKKYTT 824


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,163
Number of Sequences: 336
Number of extensions: 2631
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)