Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M05
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    29   0.58 
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    27   2.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   5.4  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.2  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 70  PQPALQSKPNFTFSSHGIQEANGRVVLGGPNRRSQLTSD 186
           P+P+ + + + T S  G+  +  R V GG N  S+ TSD
Sbjct: 446 PEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSD 484


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 416 SGARQVIGRLRRRNLISTWGGNQSSVDILIKPNVVQNITRVFKRESIXYNVV 571
           S A  + G L+  NLI+ W  N+ ++D     +  +++ + F  E+  +N+V
Sbjct: 171 SEACSLAGHLKLSNLIAVWDNNKITIDGATSMSFDEDVEKRF--EAYGWNIV 220


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 525  FCTTFGLIRMS--TED*FPPHVEIRFLRRSLP 436
            +C   G   MS  TE   P HV I FLR+ LP
Sbjct: 1201 WCYYIGSYIMSSPTEGILPEHVRIPFLRKCLP 1232


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 373 NFFRLMIAFNCFRYYYCIFNN 311
           NFF L ++  C  YY+ + NN
Sbjct: 264 NFFPLFLSILCVGYYHHLLNN 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,035
Number of Sequences: 5004
Number of extensions: 45342
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)