Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M05
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  31   1.1  
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     30   1.4  
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               23   8.2  

>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
 Frame = +2

Query: 365 KKIDYSGSQVWQVSTTKSGARQVIGRLRRRNLISTWGGNQSSVDILIKPNVVQNITR-VF 541
           +++  S S+V  +S       +VI  L + N       ++ S D+++K   V  +T+ V 
Sbjct: 449 EELHVSSSEVLNLSGELKERGEVIAGLEQTNYSQASKISEHSEDVVVKQENVAALTKAVV 508

Query: 542 KRESIXYN---------VVIXDLQKRINEENPPLXNDEIELQDR 646
            +E    N         VVI ++ KRI E+   + N E  + D+
Sbjct: 509 SKEQQLLNLDQKNKEKEVVILEMNKRIQEKKETITNMEKNISDK 552


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 45  RGGGSSKPPATSSAVKTELYVQ*PWDPRGKRSCCS 149
           RG  S+KPPAT S+ KT    +    PRG  S  S
Sbjct: 41  RGAPSAKPPATPSSSKTTSTARSTVKPRGTTSAAS 75


>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 13  GVXVASLKRG*EAAVRRSPPQPALQSKPNFTFSSHGIQEA 132
           G  V   K+G +  V++ PP PA + + +F   S  ++EA
Sbjct: 8   GAAVEQKKKGKKQVVKQEPPTPA-ERRAHFEDDSENVEEA 46


>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 23.4 bits (48), Expect(2) = 8.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 418 RFCSGNLPHL*TGVINFFRLMIAFNCFRYYYCIF 317
           R  S +LP +   V +FF   +   CF+Y Y +F
Sbjct: 4   RCFSLSLPGVFRYVYSFFFFAMFTRCFQYVYPVF 37



 Score = 22.6 bits (46), Expect(2) = 8.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 343 CFRYYYCIFNNC 308
           CFRY Y +F+ C
Sbjct: 44  CFRYVYPVFSLC 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,812,466
Number of Sequences: 59808
Number of extensions: 364021
Number of successful extensions: 1024
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)