Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M05
         (652 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061884-1|AAL32101.1| 1755|Homo sapiens ubiquitin ligase E3 alp...    30   6.2  
AL391814-3|CAI14738.1| 1755|Homo sapiens ubiquitin protein ligas...    30   6.2  
AL391814-2|CAI95298.1| 1755|Homo sapiens ubiquitin protein ligas...    30   6.2  
AL136223-3|CAI19920.1| 1755|Homo sapiens ubiquitin protein ligas...    30   6.2  
AL136223-2|CAI95666.1| 1755|Homo sapiens ubiquitin protein ligas...    30   6.2  
AL049843-4|CAI20399.1| 1755|Homo sapiens ubiquitin protein ligas...    30   6.2  
AL049843-3|CAI95685.1| 1755|Homo sapiens ubiquitin protein ligas...    30   6.2  
AB002347-1|BAA20806.1| 1275|Homo sapiens KIAA0349 protein.             30   6.2  

>AY061884-1|AAL32101.1| 1755|Homo sapiens ubiquitin ligase E3 alpha-II
            protein.
          Length = 1755

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 457  PDFYMGRESVFCGHPYQTECRTKYYTCFQKREHXLQRRDXRFTKED 594
            PD   G  +  CGH     C  +Y+   Q +E   Q+R    T  D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202


>AL391814-3|CAI14738.1| 1755|Homo sapiens ubiquitin protein ligase E3
            component n-recognin 2 protein.
          Length = 1755

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 457  PDFYMGRESVFCGHPYQTECRTKYYTCFQKREHXLQRRDXRFTKED 594
            PD   G  +  CGH     C  +Y+   Q +E   Q+R    T  D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202


>AL391814-2|CAI95298.1| 1755|Homo sapiens ubiquitin protein ligase E3
            component n-recognin 2 protein.
          Length = 1755

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 457  PDFYMGRESVFCGHPYQTECRTKYYTCFQKREHXLQRRDXRFTKED 594
            PD   G  +  CGH     C  +Y+   Q +E   Q+R    T  D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202


>AL136223-3|CAI19920.1| 1755|Homo sapiens ubiquitin protein ligase E3
            component n-recognin 2 protein.
          Length = 1755

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 457  PDFYMGRESVFCGHPYQTECRTKYYTCFQKREHXLQRRDXRFTKED 594
            PD   G  +  CGH     C  +Y+   Q +E   Q+R    T  D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202


>AL136223-2|CAI95666.1| 1755|Homo sapiens ubiquitin protein ligase E3
            component n-recognin 2 protein.
          Length = 1755

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 457  PDFYMGRESVFCGHPYQTECRTKYYTCFQKREHXLQRRDXRFTKED 594
            PD   G  +  CGH     C  +Y+   Q +E   Q+R    T  D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202


>AL049843-4|CAI20399.1| 1755|Homo sapiens ubiquitin protein ligase E3
            component n-recognin 2 protein.
          Length = 1755

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 457  PDFYMGRESVFCGHPYQTECRTKYYTCFQKREHXLQRRDXRFTKED 594
            PD   G  +  CGH     C  +Y+   Q +E   Q+R    T  D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202


>AL049843-3|CAI95685.1| 1755|Homo sapiens ubiquitin protein ligase E3
            component n-recognin 2 protein.
          Length = 1755

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 457  PDFYMGRESVFCGHPYQTECRTKYYTCFQKREHXLQRRDXRFTKED 594
            PD   G  +  CGH     C  +Y+   Q +E   Q+R    T  D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202


>AB002347-1|BAA20806.1| 1275|Homo sapiens KIAA0349 protein.
          Length = 1275

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 457 PDFYMGRESVFCGHPYQTECRTKYYTCFQKREHXLQRRDXRFTKED 594
           PD   G  +  CGH     C  +Y+   Q +E   Q+R    T  D
Sbjct: 677 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 722


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,826,044
Number of Sequences: 237096
Number of extensions: 1639829
Number of successful extensions: 3672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3663
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)