Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M05
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ...    29   2.0  
At2g31760.1 68415.m03878 zinc finger protein-related contains lo...    27   8.2  

>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
           protein low similarity to SP|Q03251 Glycine-rich
           RNA-binding protein 8 (CCR1 protein) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 181

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 21  GRIIEARLRGGGSSKPPATSSAVKTELYV 107
           G +I + L    SS PP++SS  KT+LYV
Sbjct: 53  GVLISSCLSTDSSSSPPSSSSGPKTKLYV 81


>At2g31760.1 68415.m03878 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 514

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 481 SVFCGHPYQTECRTKYYT 534
           SV CGHPY   C T Y T
Sbjct: 135 SVSCGHPYCKTCWTGYIT 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,062,195
Number of Sequences: 28952
Number of extensions: 247845
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)