Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M04
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 190 2e-49
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 181 9e-47
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 102 5e-23
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 92 6e-20
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 91 1e-19
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 86 5e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 83 3e-17
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 77 2e-15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 72 8e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 70 3e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 68 1e-12
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 63 4e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 62 7e-11
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 61 1e-10
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 60 2e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 58 1e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 58 1e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 54 1e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 52 7e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 6e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 2e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 40 2e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 38 0.001
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.3
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 3.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 4.1
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 4.1
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 5.4
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 25 7.2
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 9.5
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 9.5
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 9.5
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 190 bits (463), Expect = 2e-49
Identities = 88/133 (66%), Positives = 109/133 (81%)
Frame = +1
Query: 190 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIA 369
E + NVE TSEDV + +F+ M L+++LLRGIY YG+E PSA+Q R+I+ I KGRDVIA
Sbjct: 4 EIMENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIA 63
Query: 370 QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHAC 549
QAQSGTGKTATFSI ILQ++D ++R+TQ LILSPTRELA QIQ V+LALGD MNVQCHAC
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHAC 123
Query: 550 IGGTNLXXRYKEI 588
IGGT++ K++
Sbjct: 124 IGGTSVGNDIKKL 136
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +2
Query: 575 DIRKLDYGQHVVSGTPGRVFDMIR 646
DI+KLDYGQHVVSGTPGRV DMIR
Sbjct: 132 DIKKLDYGQHVVSGTPGRVTDMIR 155
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 181 bits (440), Expect = 9e-47
Identities = 86/124 (69%), Positives = 105/124 (84%)
Frame = +1
Query: 190 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIA 369
+ L + +T+ D EVI TFD M L+ ELLRGIY YGFE+PSAIQQR+I+PI+ RDV+A
Sbjct: 3 DQLEDSVIETNYD-EVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLA 61
Query: 370 QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHAC 549
QAQSGTGKTATFSIS+LQ +DT+L++ Q LIL+PTRELA QIQKV++ALGD MNV+CHAC
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHAC 121
Query: 550 IGGT 561
IGGT
Sbjct: 122 IGGT 125
Score = 33.9 bits (74), Expect = 0.020
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 563 ILXXDIRKLDYGQHVVSGTPGRVFDMIR 646
++ D+ L G HVV GTPGRV DMI+
Sbjct: 126 LVRDDMAALQAGVHVVVGTPGRVHDMIQ 153
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 102 bits (244), Expect = 5e-23
Identities = 53/107 (49%), Positives = 69/107 (64%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
F+ L+ ELL GI+ GFE+PS IQ+ SI + GRD++A+A++GTGKTA F I L+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 427 LDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNL 567
+DT + Q LIL PTRELA Q +V LG MNV+ GGT L
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTL 152
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 539 VMLVLEVPILXXDIRKLDYGQHVVSGTPGRVFDM 640
VM+ L DI +L+ H+V GTPGRV D+
Sbjct: 143 VMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDL 176
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 92.3 bits (219), Expect = 6e-20
Identities = 44/129 (34%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Frame = +1
Query: 157 SEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSI 336
S + N + L++++ D + + + +F+ + L+ ELL+GIY+ F+KPS IQ++++
Sbjct: 86 SNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
Query: 337 LPIVKG--RDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVIL 510
++ R++I Q+QSGTGKTA F++++L +D ++ + Q + L+P+RELA QI V+
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVT 205
Query: 511 ALGDFMNVQ 537
+G + V+
Sbjct: 206 EMGKYTEVK 214
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 91.1 bits (216), Expect = 1e-19
Identities = 47/113 (41%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
F SMGL LLR I+ GF+ P+ IQ+++I +++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 427 LDTTL--RETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRY 579
L +TL T+ LILSP RELA Q KV+ +++ A +GG +L ++
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQF 183
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 85.8 bits (203), Expect = 5e-18
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
+F SM L +L+G+ GFE P+ IQ ++I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 424 TL---DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEIGL 594
L + T+VLIL PTRELA Q V + F ++ CIGG +L + +E+
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 595 R 597
R
Sbjct: 380 R 380
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 83.4 bits (197), Expect = 3e-17
Identities = 46/127 (36%), Positives = 71/127 (55%)
Frame = +1
Query: 187 SEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVI 366
SE S S++ E TF +G+ DEL GF+ P+ IQQ +I ++ RDVI
Sbjct: 28 SEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
Query: 367 AQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHA 546
AQ+G+GKTA F++ ++Q L ++L+PTRELA QI + A+G + V+
Sbjct: 88 GLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVV 147
Query: 547 CIGGTNL 567
+GG ++
Sbjct: 148 IVGGMDM 154
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 77.0 bits (181), Expect = 2e-15
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Frame = +1
Query: 262 LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL 441
L+ ELLR I GFE PS +QQ I + G DV+ QA+SG GKTA F +S LQ ++
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 442 RETQVLILSPTRELATQIQKVILALGDFM-NVQCHACIGGTNL 567
E VL+L TRELA QI+ ++ +V+ GG N+
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINI 160
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 71.7 bits (168), Expect = 8e-14
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Frame = +1
Query: 202 NVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQS 381
N+ ++ D+E F + L + + + I GFE + IQ+RSI P++ GRDV+ A++
Sbjct: 79 NLNASSTSDIE---KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKT 135
Query: 382 GTGKTATF---SISILQTLDTTLRE-TQVLILSPTRELATQIQKVILALGDFMNVQCHAC 549
G+GKT F +I +L L R T V+I+SPTRELA QI V L + +
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIV 195
Query: 550 IGGTN 564
IGG N
Sbjct: 196 IGGAN 200
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 69.7 bits (163), Expect = 3e-13
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
TF L L R I+ FEKP+++Q +I ++G+D++AQA++G+GKTA + I IL+
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 424 TL------DTTLRETQVLILSPTRELATQIQKVILALGDF 525
L D R L+L PTRELA Q+ V+ L F
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAF 114
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 68.1 bits (159), Expect = 1e-12
Identities = 37/118 (31%), Positives = 66/118 (55%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
+F +G+ L+ + +P+ IQ+ I I++GR+ I A++G+GKTA F++ I++
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 424 TLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEIGLR 597
LIL+PTRELA QI + ALG +N++ +GG ++ + ++ R
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKR 125
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 602 HVVSGTPGRVFDMIR 646
HVV TPGR+ D+IR
Sbjct: 127 HVVVATPGRLADLIR 141
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 62.9 bits (146), Expect = 4e-11
Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Frame = +1
Query: 124 LEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGF 303
+E ++ ++ +EV L L ++ + + + ++ GL + + I + G+
Sbjct: 383 VEPEELKNLSPAEVDE----LRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGY 438
Query: 304 EKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL-DTTLRETQ----VLILS 468
EKP++IQ ++I I GRDVI A++G+GKT F + + + + D +T +I++
Sbjct: 439 EKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMT 498
Query: 469 PTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
PTRELA QI + +N++ GG + + ++
Sbjct: 499 PTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADL 538
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 62.1 bits (144), Expect = 7e-11
Identities = 39/135 (28%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Frame = +1
Query: 178 KILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGR 357
+IL ED N+ + + ++ GL E+L+ + +++PS+IQ+ +I +++ +
Sbjct: 229 RILKEDY-NISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
Query: 358 DVIAQAQSGTGKTATFSISILQTLD--TTLRETQV------LILSPTRELATQIQKVILA 513
D+I A++G+GKTA F I ++ + L E+ + ++L+PTRELA QIQ
Sbjct: 288 DLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNK 347
Query: 514 LGDFMNVQCHACIGG 558
+ + +C + +GG
Sbjct: 348 FAEPLGFRCVSVVGG 362
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 61.3 bits (142), Expect = 1e-10
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Frame = +1
Query: 154 SSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRS 333
+ E + + I ++S + +SE++ I FD + + +L G+ Y ++P+ IQ +
Sbjct: 138 NDEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNY--KEPTPIQAAT 195
Query: 334 ILPIVKGRDVIAQAQSGTGKTATFSISILQTLD---TTLRETQVLILSPTRELATQIQKV 504
++ GRDV+ A++G+GKT F I LQ L+ +VL++SPTRELA Q +
Sbjct: 196 WPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYEN 255
Query: 505 ILALGDFMNVQCHACIGG 558
+ +L N++ GG
Sbjct: 256 LNSLIQGTNLKAVVVYGG 273
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 60.5 bits (140), Expect = 2e-10
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Frame = +1
Query: 238 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISI 417
+ TF+ G + +L+ + GFE P+ IQQ++ + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 418 L-----QTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYK 582
+ Q L + VL+L+PTRELA QIQ+ G ++ GG + +
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 583 EIGLRTACCV 612
++ C+
Sbjct: 241 DLIRGVEICI 250
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 57.6 bits (133), Expect = 1e-09
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Frame = +1
Query: 145 KMTS--SEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSA 318
+MTS S+V+S L + S V+V + L E+L + GF KP
Sbjct: 89 EMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDV-SAWAHFSLSPEMLGSLSKAGFSKPMP 147
Query: 319 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ--TLDTTLRETQVLILSPTRELATQ 492
IQ I G D+I +A +G+GKT F I IL+ + + Q L+++PTRELA Q
Sbjct: 148 IQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQ 207
Query: 493 IQKVILALGDFMNVQCHACIGG 558
I + + N++ + GG
Sbjct: 208 ICQHFELIKPSPNIRVMSITGG 229
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 57.6 bits (133), Expect = 1e-09
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Frame = +1
Query: 232 EVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSI 411
E + F + L + F + IQ++ I +KGRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 412 SILQTLD----TTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTN 564
+++ L T+L L++SPTRELA Q + ++ +G + IGG N
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNN 150
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 54.4 bits (125), Expect = 1e-08
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +1
Query: 226 DVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF 405
D+E + F S L LL+ I G+ +P+ +Q+ SI + GRD++A AQ+G+GKTA F
Sbjct: 164 DIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGF 223
Query: 406 SISIL 420
IL
Sbjct: 224 LFPIL 228
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 578 IRKLDYGQHVVSGTPGRVFDMI 643
IR++D G ++S TPGR+ D+I
Sbjct: 299 IRQIDQGCDLLSATPGRLVDLI 320
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 52.0 bits (119), Expect = 7e-08
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
+F S+ + L + GF+K + +Q +I +K +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 424 TL---DTTLRETQVLILSPTRELATQIQKV 504
+ DT LI++PTRELATQI V
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 45.6 bits (103), Expect = 6e-06
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Frame = +1
Query: 298 GFEKPSAIQQRSILPIVKGRD-VIAQAQSGTGKTATFSISILQTL---DTTLRETQV--L 459
GFEK + +QQR + + + + QA++GTGKT F + + + L +++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 460 ILSPTRELATQIQKVILALGDFMNVQCHACIGGTN 564
ILSPTRELA QI + L ++ IGG +
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNS 151
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 313 SAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL-RETQVLILSPTRELAT 489
+ IQ+ +I I RD++A A +G+GKT + ILQ L + + +I++PTREL
Sbjct: 70 TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCE 129
Query: 490 QIQK 501
QI +
Sbjct: 130 QIYR 133
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 40.3 bits (90), Expect = 2e-04
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Frame = +1
Query: 118 KNLEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTY 297
+NLE N I + +++ +SN I + + + V+ DT L D L +
Sbjct: 114 QNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQ-------------LADHLNNKM--- 157
Query: 298 GFEKPSAIQQRSILPIVK--GRDVIAQAQSGTGKTATFSISILQ-------TLDTTLRET 450
P+AIQ + ++ +D +AQ+G+GKT + + I+Q L T
Sbjct: 158 NISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGI 217
Query: 451 QVLILSPTRELATQIQKV 504
+I++PTREL QI V
Sbjct: 218 YAVIMAPTRELCQQIYNV 235
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 37.9 bits (84), Expect = 0.001
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Frame = +1
Query: 253 SMGLRDELLRGIYTY-GFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL 429
S L EL+ +YT EK Q +I + G VI + +GK+ + I ILQ+L
Sbjct: 292 SRPLSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL 351
Query: 430 DTTLRETQVLILSPTRELATQIQKVILALGDFM----NVQCHACIGGTNLXXR 576
+ T + PT+ LA +K ++ + +M N++ G T L R
Sbjct: 352 LEDNQSTAFFVF-PTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESR 403
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 227 MSKLFPLLTPWDFEMSYCEEYTHMVSKNLQQFSREASCL*SKAEM**LKHNLVQERLRHS 406
MS L L T + FE++ +++ +++K + F + ++ EM L HN+ Q R S
Sbjct: 1124 MSFLVTLQTTYSFELTLNYDFSELLTKVVFPFLSPVDTITAEQEMRDLLHNIRQPLPRSS 1183
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 287 IPRNNSSRSPMESKVGITSTSSLVSNSTF 201
I +NN+ +SP++ +V ITS SS +TF
Sbjct: 41 IIQNNTRKSPLK-RVSITSESSFYKENTF 68
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 325 QRSILPIVKGRD--VIAQAQSGTGKTATFSISILQTLDTTLRE 447
Q + PI G D ++ A +G GKT + IL L LRE
Sbjct: 524 QSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLRE 566
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 360 ISAFDYRQDASLLNC*RF--FETICVYSSQ*LISKSH 256
I AF Y D LNC + ++T+C+ ++ +I SH
Sbjct: 784 IKAFTYNVDTKQLNCIKSWKYKTVCLVFAEAVIFGSH 820
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 299 PYVYIPRNNSSRSPMESKVGITSTSS 222
PY IP NN SPM VG + +++
Sbjct: 303 PYKSIPLNNRPYSPMSEIVGFSGSTT 328
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 355 RDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQK 501
R + +G+GKTA F I Q LIL +ELA Q K
Sbjct: 47 RRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQALK 95
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 190 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSA 318
+DLS E D++ +PT D + + L + KP A
Sbjct: 94 QDLSTAETAPKVDIDAVPTIDGKNIFEIDLESFDDKPWRKPGA 136
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 151 TSSEVSSNXKILSEDLSNVEFDTSEDVEVIPT 246
+ SEV S + SE++ N+E ED E P+
Sbjct: 1337 SESEVGSKDDVQSEEVENLESAGDEDEEEEPS 1368
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 9.5
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Frame = +1
Query: 304 EKPSAIQQRSILPIVKGRDVIA-QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRE 480
E P Q+ L I +I ++G+GKT +L L TQ+ P R
Sbjct: 74 ELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRV 133
Query: 481 LATQIQKVI-----LALGDFM--NVQCHACIGGTNLXXRYKEIGL 594
A + K + + LG+ + N++ C G N +Y G+
Sbjct: 134 AAMSVAKRVADEMDVDLGEEVGYNIRFEDC-SGPNTLLKYMTDGM 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,691
Number of Sequences: 5004
Number of extensions: 49076
Number of successful extensions: 233
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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