Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M04
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 163 9e-41
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 159 1e-39
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 159 1e-39
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 157 8e-39
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 153 1e-37
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 99 3e-21
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 99 3e-21
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 98 4e-21
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 98 4e-21
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 94 8e-20
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 84 7e-17
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 82 4e-16
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 82 4e-16
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 81 5e-16
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 77 8e-15
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 75 4e-14
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 75 4e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 75 4e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 73 2e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 73 2e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 73 2e-13
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 70 1e-12
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 69 4e-12
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 65 3e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 65 3e-11
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 65 4e-11
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 65 4e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 64 8e-11
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 64 8e-11
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 64 1e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 63 2e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 62 2e-10
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 62 2e-10
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 60 2e-09
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 60 2e-09
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 59 2e-09
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 58 5e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 58 5e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 57 1e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 57 1e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 57 1e-08
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 56 2e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 56 3e-08
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 54 6e-08
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 54 8e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 53 1e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 53 1e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 53 2e-07
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 52 4e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 52 4e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 51 6e-07
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 50 1e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 50 1e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 50 2e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 49 3e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 48 4e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 47 9e-06
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 47 9e-06
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 47 9e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 44 7e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 44 1e-04
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 42 3e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 41 6e-04
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 40 0.001
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 30 1.2
At4g09290.1 68417.m01537 hypothetical protein 30 1.5
At3g30190.1 68416.m03809 hypothetical protein 30 1.5
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi... 27 8.2
At2g25660.1 68415.m03075 expressed protein 27 8.2
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 163 bits (396), Expect = 9e-41
Identities = 72/125 (57%), Positives = 101/125 (80%)
Frame = +1
Query: 193 DLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQ 372
D + F+T++ +E I +F+ MG+++++LRG+Y YGFEKPSAIQQR+++PI++GRDVIAQ
Sbjct: 19 DDDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQ 78
Query: 373 AQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACI 552
AQSGTGKT+ ++S+ Q +DT+ RE Q LILSPTRELATQ +K I A+G N+Q HACI
Sbjct: 79 AQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
Query: 553 GGTNL 567
GG ++
Sbjct: 139 GGNSV 143
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 575 DIRKLDYGQHVVSGTPGRVFDMIR 646
DIRKL++G HVVSGTPGRV DMI+
Sbjct: 146 DIRKLEHGVHVVSGTPGRVCDMIK 169
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 159 bits (387), Expect = 1e-39
Identities = 78/120 (65%), Positives = 94/120 (78%)
Frame = +1
Query: 208 EFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGT 387
EF TS D EV +FD+MGL++ LLRGIY YGFEKPSAIQQR I+P KG DVI QAQSGT
Sbjct: 29 EFFTSYD-EVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGT 87
Query: 388 GKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNL 567
GKTATF +LQ LD L + Q L+L+PTRELA QI+KV+ ALGD+ V+ HAC+GGT++
Sbjct: 88 GKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSV 147
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = +2
Query: 575 DIRKLDYGQHVVSGTPGRVFDMIR 646
D R L G HVV GTPGRVFDM+R
Sbjct: 150 DQRILQAGVHVVVGTPGRVFDMLR 173
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 159 bits (386), Expect = 1e-39
Identities = 77/120 (64%), Positives = 96/120 (80%)
Frame = +1
Query: 208 EFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGT 387
EF TS D +V +FD+MGL++ LLRGIY YGFEKPSAIQQR I+P KG DVI QAQSGT
Sbjct: 29 EFFTSYD-DVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGT 87
Query: 388 GKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNL 567
GKTATF +LQ LD +L + Q L+L+PTRELA QI+KV+ ALGD++ V+ HAC+GGT++
Sbjct: 88 GKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSV 147
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2
Query: 575 DIRKLDYGQHVVSGTPGRVFDMIR 646
D R L G HVV GTPGRVFDM++
Sbjct: 150 DQRILQAGVHVVVGTPGRVFDMLK 173
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 157 bits (380), Expect = 8e-39
Identities = 69/132 (52%), Positives = 103/132 (78%)
Frame = +1
Query: 193 DLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQ 372
D N+ F+T++ ++ I +FD MG+ D++LRG+Y YG++KPS IQQR+++PI+KGRDVIAQ
Sbjct: 6 DEENLVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQ 65
Query: 373 AQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACI 552
AQSGTGKT+ +IS+ Q ++ + R+ QVL+LSP+RELA+Q +K I A+G N+Q HACI
Sbjct: 66 AQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACI 125
Query: 553 GGTNLXXRYKEI 588
GG ++ K++
Sbjct: 126 GGKSIGEDIKKL 137
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +2
Query: 575 DIRKLDYGQHVVSGTPGRVFDMIR 646
DI+KL+ G H VSGTPGRV+DMI+
Sbjct: 133 DIKKLERGVHAVSGTPGRVYDMIK 156
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 153 bits (370), Expect = 1e-37
Identities = 77/129 (59%), Positives = 97/129 (75%)
Frame = +1
Query: 181 ILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRD 360
IL E+ F T+ D EV +FD+M L+ +LLRGIY YGFEKPSAIQQR I+P KG D
Sbjct: 23 ILGEE-GEETFYTNYD-EVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLD 80
Query: 361 VIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQC 540
VI QAQSGTGKTATF +LQ LD +L + Q L+L+PTRELA QI+KV+ ALGD++ V+
Sbjct: 81 VIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKA 140
Query: 541 HACIGGTNL 567
AC+GGT++
Sbjct: 141 QACVGGTSV 149
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2
Query: 575 DIRKLDYGQHVVSGTPGRVFDMIR 646
D R L G HVV GTPGRVFD++R
Sbjct: 152 DQRVLQSGVHVVVGTPGRVFDLLR 175
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 98.7 bits (235), Expect = 3e-21
Identities = 48/107 (44%), Positives = 68/107 (63%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
F+ L+ +LL+GIY GFEKPS IQ+ SI + G D++A+A++GTGKT F I +L+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 427 LDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNL 567
+D Q +IL PTRELA Q +V L ++N+Q GGT+L
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSL 232
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 539 VMLVLEVPILXXDIRKLDYGQHVVSGTPGRVFDMIR 646
VM+ L DI +L H++ GTPGR+ D+ +
Sbjct: 223 VMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTK 258
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 98.7 bits (235), Expect = 3e-21
Identities = 48/107 (44%), Positives = 68/107 (63%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
F+ L+ +LL+GIY GFEKPS IQ+ SI + G D++A+A++GTGKT F I +L+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 427 LDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNL 567
+D Q +IL PTRELA Q +V L ++N+Q GGT+L
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSL 232
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 539 VMLVLEVPILXXDIRKLDYGQHVVSGTPGRVFDMIR 646
VM+ L DI +L H++ GTPGR+ D+ +
Sbjct: 223 VMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTK 258
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 98.3 bits (234), Expect = 4e-21
Identities = 49/107 (45%), Positives = 68/107 (63%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
F+ L+ ELL GIY GFE+PS IQ+ SI + GRD++A+A++GTGKTA F I +L+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 427 LDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNL 567
+D Q +I+ PTRELA Q +V LG + +Q GGT+L
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSL 239
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 539 VMLVLEVPILXXDIRKLDYGQHVVSGTPGRVFDMIR 646
VM+ L DI +L H++ GTPGR+ D+ +
Sbjct: 230 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTK 265
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 98.3 bits (234), Expect = 4e-21
Identities = 49/107 (45%), Positives = 68/107 (63%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
F+ L+ ELL GIY GFE+PS IQ+ SI + GRD++A+A++GTGKTA F I +L+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 427 LDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNL 567
+D Q +I+ PTRELA Q +V LG + +Q GGT+L
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSL 239
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 539 VMLVLEVPILXXDIRKLDYGQHVVSGTPGRVFDMIR 646
VM+ L DI +L H++ GTPGR+ D+ +
Sbjct: 230 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTK 265
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 93.9 bits (223), Expect = 8e-20
Identities = 47/107 (43%), Positives = 66/107 (61%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
F+ L+ +LLRGIY GFEKPS IQ+ SI + G D++A+A++GTGKT F I L+
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 427 LDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNL 567
+D Q +IL PTRELA Q +V L ++ ++ GGT+L
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSL 262
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 539 VMLVLEVPILXXDIRKLDYGQHVVSGTPGRVFDMIR 646
VM+ L DI +L H++ GTPGR+ D+ +
Sbjct: 253 VMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAK 288
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 84.2 bits (199), Expect = 7e-17
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 3/122 (2%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
TF + L LLR T G++KP+ IQ I + GRD+ A A +G+GKTA F++ L+
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 424 TL---DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEIGL 594
L + T+VLIL+PTRELA QI +I L F +++C +GG L R +E+ L
Sbjct: 228 RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGG--LSVREQEVVL 285
Query: 595 RT 600
R+
Sbjct: 286 RS 287
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 81.8 bits (193), Expect = 4e-16
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 12/137 (8%)
Frame = +1
Query: 223 EDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTAT 402
E+ EV+ TF +G+R+EL++ G++ PS IQ ++ ++G+DVI AQ+G+GKT
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 403 FSISILQTLDTTLRETQ------------VLILSPTRELATQIQKVILALGDFMNVQCHA 546
F+I ILQ L + +++ +LSPTRELA QI + ALG ++++C
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAV 122
Query: 547 CIGGTNLXXRYKEIGLR 597
+GG + + +G R
Sbjct: 123 LVGGIDRMQQTIALGKR 139
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 81.8 bits (193), Expect = 4e-16
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Frame = +1
Query: 142 RKMTSSEVSSNXKILSEDLSNVEFDT------SEDVEVIPTFDSMGLRDELLRGIYTYGF 303
RK + V+ + L D + +F+ S D F+ +GL + + G
Sbjct: 19 RKNPKTVVNIQSQKLDSDQNTPQFEKFTNPNPSSDTTSATNFEGLGLAEWAVETCKELGM 78
Query: 304 EKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTREL 483
KP+ +Q + I+ GRDV+ AQ+G+GKTA F++ IL L L+++PTREL
Sbjct: 79 RKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTREL 138
Query: 484 ATQIQKVILALGDFMNVQCHACIGGTNL 567
A Q+ + ALG +N++C +GG ++
Sbjct: 139 AFQLAEQFKALGSCLNLRCSVIVGGMDM 166
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 81.4 bits (192), Expect = 5e-16
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Frame = +1
Query: 139 IRKMTSSEVSSNXKILSE-DLSNVEFDTSEDVEVIPT--FDSMGLRDELLRGIYT-YGFE 306
+ ++ E IL E + SN++ TS D F+ + L EL++G+Y FE
Sbjct: 54 LNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFE 113
Query: 307 KPSAIQQRSILPIVKG--RDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRE 480
KPS IQ S+ I+ + +IAQA +G+GKT F + +L +D TLRE Q L + PTRE
Sbjct: 114 KPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRE 173
Query: 481 LATQIQKVILALGDFMNVQCHACI 552
LA Q +V+ +G F + +
Sbjct: 174 LANQNMEVLQKMGKFTGITAELAV 197
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 77.4 bits (182), Expect = 8e-15
Identities = 40/116 (34%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
F+S+ L + I G++ P+ IQ++++ I+ G DV+A A++G+GKTA F I +L+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 427 LDTTLRE--TQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
L + + + LILSPTR+LA Q K LG F +++ +GG ++ +++E+
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEEL 145
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 74.9 bits (176), Expect = 4e-14
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Frame = +1
Query: 262 LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL 441
L+ ELLR I GFE PS +Q I + G DVI QA+SG GKTA F +S LQ ++ +
Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112
Query: 442 RETQVLILSPTRELATQIQKVILALGDFM-NVQCHACIGGTNLXXRYKEIGLRTAC 606
+ L+L TRELA QI + ++ + + GG N+ +K++ L+ C
Sbjct: 113 GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKI-HKDL-LKNEC 166
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 74.9 bits (176), Expect = 4e-14
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Frame = +1
Query: 262 LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL 441
L+ ELLR I GFE PS +Q I + G DVI QA+SG GKTA F +S LQ ++ +
Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112
Query: 442 RETQVLILSPTRELATQIQKVILALGDFM-NVQCHACIGGTNLXXRYKEIGLRTAC 606
+ L+L TRELA QI + ++ + + GG N+ +K++ L+ C
Sbjct: 113 GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKI-HKDL-LKNEC 166
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 74.9 bits (176), Expect = 4e-14
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
TF+S GL E+LR + + GF P+ IQ ++ ++ RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 424 TLDTTLRETQ----VLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
L +++ VLIL+PTRELATQIQ L G + C GG + KE+
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKEL 554
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 72.9 bits (171), Expect = 2e-13
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
+F++ G ELLR + + GF P+ IQ +S ++GRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 424 TLDTTLRETQ----VLILSPTRELATQIQKVILALGDFMNVQCHACIGG 558
L +++ +L+LSPTRELATQIQ+ + G + C GG
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 72.9 bits (171), Expect = 2e-13
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
+F++ G ELLR + + GF P+ IQ +S ++GRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 424 TLDTTLRETQ----VLILSPTRELATQIQKVILALGDFMNVQCHACIGG 558
L +++ +L+LSPTRELATQIQ+ + G + C GG
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 72.9 bits (171), Expect = 2e-13
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
+F++ G ELLR + + GF P+ IQ +S ++GRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 424 TLDTTLRETQ----VLILSPTRELATQIQKVILALGDFMNVQCHACIGG 558
L +++ +L+LSPTRELATQIQ+ + G + C GG
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 70.1 bits (164), Expect = 1e-12
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Frame = +1
Query: 160 EVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSIL 339
EV ++ + + + ++ E +F+ +GL L+R + G EKP+ IQQ +I
Sbjct: 19 EVEKAEEVEEQRNDREQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIP 78
Query: 340 PIVKGRDVIAQAQSGTGKTATFSISILQTL---DTTLRE---TQVLILSPTRELATQIQK 501
I++G+DV+A+A++G+GKT + + +LQ L D+ ++ IL P+REL Q+
Sbjct: 79 YILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYT 138
Query: 502 VILALGDFMNVQCHA 546
+ +L + VQ A
Sbjct: 139 EVSSLIELCRVQLKA 153
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 68.5 bits (160), Expect = 4e-12
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Frame = +1
Query: 280 RGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTLRETQ-- 453
R +Y+ GF PS IQ +S ++ RD++A A++G+GKT + I L +++
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 454 --VLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
+L+LSPTRELATQIQ L G + C GG + KEI
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEI 348
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 65.3 bits (152), Expect = 3e-11
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 10/129 (7%)
Frame = +1
Query: 184 LSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDV 363
L D +NVE D E++ + + L L + G IQ+ ++P ++GRD+
Sbjct: 87 LDGDNNNVEADDGEELAI----SKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDI 142
Query: 364 IAQAQSGTGKTATFSISILQTLD------TTLRET----QVLILSPTRELATQIQKVILA 513
IA+A++GTGKT F I I++ L T R + + L+L+PTRELA Q++K I
Sbjct: 143 IARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE 202
Query: 514 LGDFMNVQC 540
+++ C
Sbjct: 203 SAPYLSTVC 211
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 65.3 bits (152), Expect = 3e-11
Identities = 40/138 (28%), Positives = 76/138 (55%), Gaps = 8/138 (5%)
Frame = +1
Query: 178 KILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGR 357
+I ED N+ + S + +++ L ELL+ + G++KPS IQ +I ++ R
Sbjct: 293 RIFREDF-NISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
Query: 358 DVIAQAQSGTGKTATFSISILQTLD-----TTLRETQ---VLILSPTRELATQIQKVILA 513
DVI A++G+GKTA F + +L + + ET+ ++++PTRELA QI++ +
Sbjct: 352 DVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVK 411
Query: 514 LGDFMNVQCHACIGGTNL 567
++ + + +GG ++
Sbjct: 412 FAHYLGFRVTSIVGGQSI 429
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 64.9 bits (151), Expect = 4e-11
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF---SIS 414
TF+S+ L D + I GF + + IQ ++I P++ G DV+ A++G+GKT F ++
Sbjct: 155 TFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE 214
Query: 415 ILQTLDTTLRE-TQVLILSPTRELATQIQKVILALGDFMNVQCHACIGG 558
+L + T R T VL++ PTRELA Q V L + + IGG
Sbjct: 215 LLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGG 263
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 64.9 bits (151), Expect = 4e-11
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Frame = +1
Query: 112 YFKNLEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIY 291
+++ LE+ I MT E + + L +S FD V+ TF+ G +++ I
Sbjct: 192 FYEELES--ISGMTEQETTDYRQRLGIRVSG--FDVHRPVK---TFEDCGFSSQIMSAIK 244
Query: 292 TYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSI-SILQTLD-TTLRETQ---V 456
+EKP+AIQ +++ ++ GRDVI A++G+GKTA F + I+ +D L+ +
Sbjct: 245 KQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIG 304
Query: 457 LILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
+I +PTRELA QI ++ A GG + ++KE+
Sbjct: 305 VICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKEL 348
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 64.1 bits (149), Expect = 8e-11
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Frame = +1
Query: 256 MGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL-- 429
+G+ E+++ + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 180
Query: 430 ----DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
+ Q L+L+PTRELA Q++K ++ C GGT + + +E+
Sbjct: 181 FNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMREL 235
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 578 IRKLDYGQHVVSGTPGRVFDMIR 646
+R+L+YG V GTPGR+ D+++
Sbjct: 232 MRELNYGIDVAVGTPGRIIDLMK 254
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 64.1 bits (149), Expect = 8e-11
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
TFDS+ L ++ I GF+ + IQ SI P+++G+DV+ A++G+GKT F I ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 424 TL----DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTN 564
L + T V+++ PTRELA Q + V L + IGG N
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNN 200
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 63.7 bits (148), Expect = 1e-10
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Frame = +1
Query: 70 KFRF*EIFTYRITCYFKNLEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTF 249
K + +F+ +F + K + S N + ++E S +E ++ + V T
Sbjct: 16 KISYASVFSTLKPSFFHSTSTRRALKSSPSSRIINLQAVAETSSEIESNSVTETTVPLTL 75
Query: 250 DSMG---LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISIL 420
+ + + +L + GF P+ IQ+ ++ + GRD I AQ+G+GKT T+ + I
Sbjct: 76 RQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIF 135
Query: 421 QTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHAC 549
++ Q +I+ PTREL Q+ KV L + C
Sbjct: 136 SLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGC 178
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 62.9 bits (146), Expect = 2e-10
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
TF S GL +LL + T G++ P+ IQ ++I + G+ ++A A +G+GKTA+F + I+
Sbjct: 111 TFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIIS 170
Query: 424 TLDT--------TLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGG 558
T R ++L+PTREL Q++ LG + + +GG
Sbjct: 171 RCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGG 223
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 62.5 bits (145), Expect = 2e-10
Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Frame = +1
Query: 256 MGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL-- 429
+G+ E+++ + + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 168
Query: 430 ----DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
R L+L+PTRELA Q++K ++ C GGT + + +++
Sbjct: 169 YNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQL 223
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 578 IRKLDYGQHVVSGTPGRVFDMIR 646
+R+LDYG V GTPGRV D+++
Sbjct: 220 MRQLDYGVDVAVGTPGRVIDLMK 242
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 62.5 bits (145), Expect = 2e-10
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Frame = +1
Query: 103 ITCYFKN--LEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDEL 276
+T + KN +E+ + MT +EV K L + + + + + +F +G D +
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRK-----LREITVEGKDIPKPVKSFRDVGFPDYV 110
Query: 277 LRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTLRETQ- 453
L + GF +P+ IQ + +KGRD+I A++G+GKT ++ + + ++
Sbjct: 111 LEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHG 170
Query: 454 ----VLILSPTRELATQIQKVILALGDFMNVQCHACIGG 558
VL+L+PTRELA QIQ+ G ++ GG
Sbjct: 171 DGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGG 209
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 59.7 bits (138), Expect = 2e-09
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Frame = +1
Query: 124 LEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGF 303
+E+ ++ MT +V+ D+S D + +++ F D +L I GF
Sbjct: 131 VESPTVQAMTEQDVAMYRT--ERDISVEGRDVPKPMKM---FQDANFPDNILEAIAKLGF 185
Query: 304 EKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTLRETQ-----VLILS 468
+P+ IQ + +KGRD+I A++G+GKT + + L + R Q VLIL+
Sbjct: 186 TEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILA 245
Query: 469 PTRELATQIQKVILALGDFMNVQCHACIGG 558
PTRELA QIQ+ G V+ GG
Sbjct: 246 PTRELAVQIQEESRKFGLRSGVRSTCIYGG 275
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 59.7 bits (138), Expect = 2e-09
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Frame = +1
Query: 124 LEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGF 303
+E+ ++ MT +V+ D+S D + +++ F D +L I GF
Sbjct: 131 VESPTVQAMTEQDVAMYRT--ERDISVEGRDVPKPMKM---FQDANFPDNILEAIAKLGF 185
Query: 304 EKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTLRETQ-----VLILS 468
+P+ IQ + +KGRD+I A++G+GKT + + L + R Q VLIL+
Sbjct: 186 TEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILA 245
Query: 469 PTRELATQIQKVILALGDFMNVQCHACIGG 558
PTRELA QIQ+ G V+ GG
Sbjct: 246 PTRELAVQIQEESRKFGLRSGVRSTCIYGG 275
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 59.3 bits (137), Expect = 2e-09
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Frame = +1
Query: 124 LEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGF 303
+E I +MT EV++ K L ++ + I + GL ++L + +
Sbjct: 495 IEVKDISRMTQEEVNTYRKELE-----LKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNY 549
Query: 304 EKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL-DTTLRETQ----VLILS 468
EKP IQ +++ I+ GRD I A++G+GKT F + +L+ + D E L+++
Sbjct: 550 EKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMA 609
Query: 469 PTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
PTREL QI I + ++C GG+ + + E+
Sbjct: 610 PTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISEL 649
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 58.0 bits (134), Expect = 5e-09
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Frame = +1
Query: 190 EDLSNVEFDTSEDVEV----------IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSIL 339
+D + + FD ED+ + + TF + L + L I + KP+ +Q+ +I
Sbjct: 132 QDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIP 191
Query: 340 PIVKGRDVIAQAQSGTGKTATFSISILQTL--DTTLRETQ--------VLILSPTRELAT 489
+++GRD++A AQ+G+GKTA F I+ + D ++ + +ILSPTRELA+
Sbjct: 192 ILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELAS 251
Query: 490 QIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
QI V+ GGT + + +E+
Sbjct: 252 QIHDEAKKFSYQTGVKVVVAYGGTPINQQLREL 284
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 58.0 bits (134), Expect = 5e-09
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
+F+ +GL D LL + GF P+ +Q ++ I+KG D + Q+ +G+GKT + + IL
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 424 TL-------------DTTLRETQVLILSPTRELATQI-QKVILALGDFMNVQCHACIGGT 561
+ + E Q +I++P+REL QI ++V LG +GG
Sbjct: 171 EIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGA 230
Query: 562 N 564
N
Sbjct: 231 N 231
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 56.8 bits (131), Expect = 1e-08
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF---SISI 417
FD L L+GI GF+ + +Q+ ++ I++G+D++A+A++GTGKT F SI
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 418 LQTLDTTLRETQ-----VLILSPTRELATQ-IQKVILALGDFMNVQCHACIGGTNLXXRY 579
+ R+ + VL++ PTRELA Q + + L ++ IGGT L
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 580 KEI 588
+ +
Sbjct: 202 RRL 204
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 56.8 bits (131), Expect = 1e-08
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Frame = +1
Query: 166 SSNXKILSEDLSNVEFDTSEDVEVIPT-FDSMGLRDELLRGIYTYGFEKPSAIQQRSILP 342
+++ K + D E + D + T FD L L+ I GFE + +Q+ ++
Sbjct: 356 AASAKAVQTDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPI 415
Query: 343 IVKGRDVIAQAQSGTGKTATFSISILQTL--------DTTLRETQVLILSPTRELATQIQ 498
I++G+DV+A+A++GTGKT F + ++ + D+ VL++ PTRELA+Q
Sbjct: 416 ILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAA 475
Query: 499 KVILALGDF-MNVQCHACIGGTNL 567
L + ++ IGGT L
Sbjct: 476 AEANTLLKYHPSIGVQVVIGGTKL 499
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 56.8 bits (131), Expect = 1e-08
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Frame = +1
Query: 172 NXKILSEDLSNVEFDTSEDVEVIP--TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPI 345
N I E ++ +TS D P TF + L + L I + KP+ +Q+ +I +
Sbjct: 121 NTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPIL 180
Query: 346 VKGRDVIAQAQSGTGKTATFSISILQTL--DTTLRETQ--------VLILSPTRELATQI 495
GRD++A AQ+G+GKTA F I+ + D + + +ILSPTRELA QI
Sbjct: 181 AAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQI 240
Query: 496 QKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
V+ GGT + + +E+
Sbjct: 241 HDEARKFSYQTGVKVVVAYGGTPVNQQIREL 271
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 56.0 bits (129), Expect = 2e-08
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Frame = +1
Query: 124 LEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGF 303
+E I +MT V++ K L ++ + I + GL ++L + +
Sbjct: 362 IEVKDISRMTQDAVNAYRKELE-----LKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNY 416
Query: 304 EKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL-DTTLRETQ----VLILS 468
EKP IQ +++ I+ GRD I A++G+GKT F + +L+ + D E L+++
Sbjct: 417 EKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMA 476
Query: 469 PTRELATQIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
PTREL QI I + + C GG+ + + E+
Sbjct: 477 PTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISEL 516
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 55.6 bits (128), Expect = 3e-08
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF---SISI 417
FD L L+ I G+E + +Q+ ++ I+KG+DV+A+A++GTGKT F SI +
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 418 LQTLDTTLRETQ-----VLILSPTRELATQIQKVILALGDF-MNVQCHACIGGTNLXXRY 579
+ T + + L++ PTRELA Q L + ++ IGGT L
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175
Query: 580 KEI 588
K +
Sbjct: 176 KRM 178
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 54.4 bits (125), Expect = 6e-08
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Frame = +1
Query: 238 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSI-S 414
+ TF L + +L T FEKPS IQ + ++ GRD+I A++G+GKT F I +
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 415 ILQTLDTTLR--------ETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTN 564
I+ L + L+LSPTRELA QI V+ G+ ++ GG++
Sbjct: 173 IMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSS 230
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 54.0 bits (124), Expect = 8e-08
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
F + + D+ RG+ + + +Q +I + GRD++ A++G+GKT F I IL+
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 427 LDTTLRETQ----VLILSPTRELATQIQKVILALGDFMNVQCHACIGG 558
L + +I+SPTRELA Q V+ +G F IGG
Sbjct: 133 LHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGG 180
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.2 bits (122), Expect = 1e-07
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Frame = +1
Query: 190 EDLSNVEFDTSEDVEV----------IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSIL 339
++ + + FD ED+ V + TF + L D L I + +P+ +Q+ +I
Sbjct: 124 QENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIP 183
Query: 340 PIVKGRDVIAQAQSGTGKTATFSISILQTL--DTTLRETQ--------VLILSPTRELAT 489
++ RD++A AQ+G+GKTA F I+ + D + + +ILSPTRELA
Sbjct: 184 ILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELAC 243
Query: 490 QIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
QI V+ GGT + + +E+
Sbjct: 244 QIHDEAKKFSYQTGVKVVVAYGGTPIHQQLREL 276
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.2 bits (122), Expect = 1e-07
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Frame = +1
Query: 190 EDLSNVEFDTSEDVEV----------IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSIL 339
++ + + FD ED+ V + TF + L D L I + +P+ +Q+ +I
Sbjct: 124 QENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIP 183
Query: 340 PIVKGRDVIAQAQSGTGKTATFSISILQTL--DTTLRETQ--------VLILSPTRELAT 489
++ RD++A AQ+G+GKTA F I+ + D + + +ILSPTRELA
Sbjct: 184 ILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELAC 243
Query: 490 QIQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
QI V+ GGT + + +E+
Sbjct: 244 QIHDEAKKFSYQTGVKVVVAYGGTPIHQQLREL 276
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
TF +G +++++ + F++P+ IQ + P++ G+ I QSG+GKT + + ++Q
Sbjct: 375 TFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434
Query: 424 TL-DTTLRE--------TQVLILSPTRELATQI 495
L + L+ +V++L PT ELA+Q+
Sbjct: 435 RLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 51.6 bits (118), Expect = 4e-07
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 24/163 (14%)
Frame = +1
Query: 142 RKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFD---SMGLRDELLRGIYTYGFEKP 312
+K+ + + + +S D + + E+ E+ P F SM L L++ IY F++P
Sbjct: 154 KKINEAAKNQDASAVSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEP 213
Query: 313 SAIQQRSI-LPIVKGRDVIAQAQSGTGKTATFSISILQTL-DTTLR----------ETQ- 453
+ IQ+ + +G+DVI A++G+GKT F + ILQ L D + E Q
Sbjct: 214 TKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQK 273
Query: 454 --------VLILSPTRELATQIQKVILALGDFMNVQCHACIGG 558
LI++PTRELA Q+ + + ++V+ +GG
Sbjct: 274 YAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGG 316
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +1
Query: 259 GLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTT 438
G +LR + GF++P+ IQ+++I ++ GR+ A A +G+GKT F +L L
Sbjct: 147 GCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRP 206
Query: 439 LRE-TQVLILSPTRELATQ 492
+ + +ILSP RELA Q
Sbjct: 207 STDGIRAVILSPARELAAQ 225
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 51.2 bits (117), Expect = 6e-07
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYT-YGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISIL 420
+F S+GL +L + GFE P+ +Q ++I I+ GRDV+ A +GTGKT + ++
Sbjct: 30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89
Query: 421 QTLD------TTLRETQVLILSPTRELATQIQKVI 507
L T L++ PTREL Q+ + +
Sbjct: 90 HHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 358 DVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFM-NV 534
DVI QA+SG GKTA F +S LQ ++ + + L+L TRELA QI + ++ +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 535 QCHACIGGTNLXXRYKEIGLRTAC 606
+ GG N+ +K++ L+ C
Sbjct: 62 KVSVFYGGVNIKI-HKDL-LKNEC 83
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Frame = +1
Query: 232 EVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSI 411
+++ F +GL +E++ + E P+ IQ I +++ + V+ + +G+GKT + +
Sbjct: 109 KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLL 168
Query: 412 SILQTL---------DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTN 564
I+Q + T R + ++L PTREL+ Q+ +V ++ + GG+
Sbjct: 169 PIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSR 228
Query: 565 L 567
+
Sbjct: 229 I 229
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 49.6 bits (113), Expect = 2e-06
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
FD + L+ + G K + +Q ++ + G+D + +A++GTGK+ F + ++T
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 427 LDTTLRETQ---------VLILSPTRELATQIQ---KVILALGDFMNVQCHACIGGT 561
+ + + VLIL PTRELA+QI K +L D + VQ IGGT
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQ--TLIGGT 491
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.8 bits (111), Expect = 3e-06
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Frame = +1
Query: 247 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 426
FD + L+ + G K + +Q ++ + G+D + +A++GTGK+ F + ++T
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 427 LDTTLRETQ---------VLILSPTRELATQIQ---KVILALGDFMNVQCHACIGGT 561
+ + + LIL PTRELA+QI K +L D + VQ IGGT
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGT 444
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +1
Query: 244 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 423
++ S+GL D + + GF++PS Q I I+ G+DVI A++G+GKT + I+
Sbjct: 81 SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID 140
Query: 424 TLDTTLRETQV 456
L T +++V
Sbjct: 141 QLTNTALDSEV 151
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 47.2 bits (107), Expect = 9e-06
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Frame = +1
Query: 127 EANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFE 306
E + ++ +SSE + K + + +VE D V S LR++L G E
Sbjct: 64 EEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKFRI--SAPLREKLKAN----GIE 117
Query: 307 KPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL----------RETQV 456
IQ + ++ G D++ +A++G GKT F + IL++L R V
Sbjct: 118 ALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSV 177
Query: 457 LILSPTRELATQIQKVILALGDFMNVQCHACIGG 558
L+L PTRELA Q+ A G + + GG
Sbjct: 178 LVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGG 211
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 47.2 bits (107), Expect = 9e-06
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Frame = +1
Query: 232 EVIPTFDSMG--LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF 405
+ +P F + L ++++ + GFE + +Q +I + +DV+ A +G+GKT F
Sbjct: 11 KALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAF 70
Query: 406 SISILQTLDTT----LRETQVL--ILSPTRELATQIQKVILA-LGDFMNVQCHACIGG 558
+ ++ + + + QV+ I+SPTREL+ QI KV + NV +GG
Sbjct: 71 LLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGG 128
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 47.2 bits (107), Expect = 9e-06
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Frame = +1
Query: 232 EVIPTFDSMG--LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF 405
E P F + L ++++ + GFE + +Q +I + +DV+ A +G+GKT F
Sbjct: 12 EAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAF 71
Query: 406 SISILQTLDTT----LRETQVL--ILSPTRELATQIQKVILAL 516
+ ++ + + + QV+ I+SPTREL+ QI KV A+
Sbjct: 72 LLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAV 114
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +1
Query: 316 AIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL-DTTLRETQVLILSPTRELATQ 492
A+ +I P RD+ + +G+GKT ++++ I+Q L +R + L++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 493 IQKVILALGDFMNVQCHACIGGTNLXXRYKEI 588
++ V A+ + + + +G +++ ++
Sbjct: 110 VKDVFDAIAPAVGLSVGSAVGQSSIAGEISQL 141
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Frame = +1
Query: 262 LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL 441
L +++ + FE + +Q +I + +DV A +G+GKT F + +++ L +
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82
Query: 442 ----RETQVL--ILSPTRELATQIQKVILA-LGDFMNVQCHACIGGTNLXXRYKEI 588
+ QV+ I+SPTREL+TQI V + NV +GG + K I
Sbjct: 83 SFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKII 138
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 42.3 bits (95), Expect = 3e-04
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Frame = +1
Query: 238 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSI-S 414
I F M LLR + G P+ IQ + + ++ GRD+I A +G+GKT F +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 415 ILQTLDTTLR------ETQV-LILSPTRELATQIQKVI------LALGDFMNVQCHACIG 555
I+ L + E + L++ P+RELA Q V+ L + ++ CIG
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 556 GTNL 567
G ++
Sbjct: 216 GVDM 219
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Frame = +1
Query: 328 RSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDT--------TLRETQVLILSPTREL 483
++I + G+ ++A A +G+GKTA+F + I+ T R ++L+PTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 484 ATQIQKVILALGDFMNVQCHACIGG 558
Q++ LG + + +GG
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGG 86
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 39.9 bits (89), Expect = 0.001
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Frame = +1
Query: 238 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISI 417
I F M +L + G +P+ IQ + + I+ GRD+I A +G+GKT F + +
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 418 L-------QTLDTTLRETQV-LILSPTRELATQIQKVI------LALGDFMNVQCHACIG 555
+ + E + LI+ P+RELA Q +V+ L + ++ CIG
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 556 GTNL 567
G ++
Sbjct: 265 GIDM 268
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 295 YGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLIL 465
+G K A Q+ I I+ GRDV+ +G GK+ + + + TTL + +L L
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSL 141
>At4g09290.1 68417.m01537 hypothetical protein
Length = 376
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 574 RYKEIGLRTACCVWHTWQSF*YDQ 645
R K + + AC +WH W+ F Y Q
Sbjct: 350 RRKTVDMGLACSLWHCWRRFWYSQ 373
>At3g30190.1 68416.m03809 hypothetical protein
Length = 263
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 24 LWLWTQFLKFPFTNLEIQILRDFHLSYNL 110
+W+W + P +N +I +L +HL NL
Sbjct: 111 MWIWHAYFGLPGSNNDINVLEAYHLFANL 139
>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 658
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 157 SEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGF 303
+++ N ++ L ++ + V+ I FD M +RD + + I YGF
Sbjct: 83 ADIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGF 131
>At2g25660.1 68415.m03075 expressed protein
Length = 2146
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +1
Query: 178 KILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGR 357
K++ +VE D E F+S L + +L G F+K + +I+P ++G+
Sbjct: 1989 KLVVTSTRSVEQDALSPSEAAKVFESQ-LAESILEGDGQLAFKKLATATLGTIMPRIEGK 2047
Query: 358 DVIAQAQ 378
QA+
Sbjct: 2048 GEFGQAR 2054
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,428,764
Number of Sequences: 28952
Number of extensions: 234070
Number of successful extensions: 873
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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