Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M03
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ...   138   8e-34
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      32   0.062
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.76 
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    28   1.0  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    28   1.3  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   4.1  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   4.1  

>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 274

 Score =  138 bits (333), Expect = 8e-34
 Identities = 66/123 (53%), Positives = 89/123 (72%)
 Frame = +3

Query: 279 NNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNI 458
           N  + G+GSGSTVVY V+RL  +   +   V  IPT FQ+KQLI+ +GL LG+ +  PN+
Sbjct: 32  NPKVIGIGSGSTVVYVVERLLTKPGVDS--VVFIPTGFQSKQLIVNNGLRLGDPDCYPNV 89

Query: 459 DVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYXKGVPI 638
           DV+ DGADEVD N+  IKGGG CL QEK+IA  +K+L+++AD  K+S  LG+ + KGVPI
Sbjct: 90  DVSFDGADEVDDNLQCIKGGGACLFQEKLIAFLAKRLVIVADSRKNSHVLGEYWKKGVPI 149

Query: 639 EVI 647
           EV+
Sbjct: 150 EVM 152


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 491  FKHDTYQRRGRVSVTRKNYCILFKEAYCYCGLYKRFCKTW 610
            F  DT   RG +   RKN  +L +  +CY GL  ++   W
Sbjct: 1088 FNRDTECYRGSMQKGRKNIALLLRGFFCYYGLTTQYSFDW 1127


>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 158

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 541 FSCNRHPPPPLISVMFESTSSAPSI 467
           F  ++ PPPP+I+  FE T+S+ S+
Sbjct: 6   FIYDKPPPPPIINKPFEQTNSSASL 30


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 321 KQQWIRYRHQKCNYS*QID 265
           K++W R+R + CNYS ++D
Sbjct: 9   KRRWNRFRREMCNYSKRLD 27


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 348 VESEKLKVTCIPTSFQAKQLIIKHGLNL 431
           V+ + LKV C  T F  + ++++ GLNL
Sbjct: 211 VQPKHLKVACATTDFSMQNVLLQIGLNL 238


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 453 NIDVTIDGADEVDSNMTLIKGGGGCLLQ 536
           N+D T+ G  EV + M LI+    C+L+
Sbjct: 377 NLDYTLRGRPEVFAGMQLIEWANACVLK 404


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 554 LFKEAYCYCGLYKRFCKTW 610
           LF ++  Y GL  RFCK W
Sbjct: 291 LFLKSIHYIGLCSRFCKQW 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,374
Number of Sequences: 5004
Number of extensions: 42085
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)