Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M03
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187 93 2e-19
04_03_0280 + 13854758-13855585 81 6e-16
03_06_0182 - 32182202-32182272,32182351-32182468,32182734-321828... 39 0.004
10_07_0080 - 12704866-12705224,12705389-12705512,12705905-127060... 29 2.4
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 28 5.6
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754 28 7.4
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 27 9.7
09_06_0034 + 20370672-20371109,20371120-20371515 27 9.7
>07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187
Length = 337
Score = 92.7 bits (220), Expect = 2e-19
Identities = 49/126 (38%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Frame = +3
Query: 273 VTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHGLNLGELETN 449
V + + G+G+GST +AV + + S KL + +PTS + + G+ L L+ +
Sbjct: 64 VESGMVLGLGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKRTFEQAQSLGIPLSTLDDH 123
Query: 450 PNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYXKG 629
P ID+ IDGADEVD ++ L+KG GG LL+EK++ + S K IV+ D TK LG
Sbjct: 124 PRIDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFIVVVDETKLVTGLGGS-GLA 182
Query: 630 VPIEVI 647
+P+EV+
Sbjct: 183 MPVEVV 188
>04_03_0280 + 13854758-13855585
Length = 275
Score = 81.4 bits (192), Expect = 6e-16
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Frame = +3
Query: 294 GVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTI 470
G+G+GST +A+ RL + + S +L V +PTS + + + G+ + L ID++I
Sbjct: 56 GLGTGSTAAHALDRLGDLLRSGELAAVAGVPTSLKTEAHAARVGIPMLPLGEAGGIDLSI 115
Query: 471 DGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYXKGVPIEVI 647
DGADEVD + L+KG GG LL+EK+I + +VI D +K +LG VP+EV+
Sbjct: 116 DGADEVDPELNLVKGRGGSLLREKMIEGSGGRFVVIVDESKLVPRLG--CTGAVPVEVV 172
>03_06_0182 -
32182202-32182272,32182351-32182468,32182734-32182829,
32182940-32183047,32183135-32183204,32183346-32183473,
32183570-32183755
Length = 258
Score = 38.7 bits (86), Expect = 0.004
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Frame = +3
Query: 270 FVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHGLNLGELET 446
FV + + G+GSG A+Q L R+ L + IP+S + +K G+ + E
Sbjct: 66 FVESGMVVGLGSGPASGLAIQYLGTRLRRGSLTGILGIPSSTISASEAVKAGIQVSSYEE 125
Query: 447 NPNIDVTIDGADEVDSN-MTLIKG------GGGCLLQEKIIASCSKKLIVIADYTK 593
ID AD ++ + MT + G G + EK I + KL I + K
Sbjct: 126 GTQIDFAFTDADIIEEDTMTAVIGRRKTESGEPSFMVEKGIVKSADKLAFIIGHEK 181
>10_07_0080 -
12704866-12705224,12705389-12705512,12705905-12706041,
12707971-12708106,12710346-12710759
Length = 389
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 244 SRRIKLSINLLRIIAFLVSVADPLLFMQYKDSLNALN 354
S R+K++I R +AFL A P+++ +K S LN
Sbjct: 192 STRLKIAIGAARGLAFLHEAAKPVIYRDFKTSNILLN 228
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 276 TNNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQ---AKQLIIKHGLNLGEL 440
+ NC+ G G STV VQ V ++LK + + + A+++ + GL+ G L
Sbjct: 474 SENCLIGEGGFSTVYKGVQSDGRMVAVKRLKQSALTNKGKKDFAREVAVMAGLHHGSL 531
>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
Length = 203
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 529 RHPPPPLISVMFESTSSAPSIVTSIFGFVSSSPRLSPCLIISC 401
R PPPP S + + S + G S +PRLS L ++C
Sbjct: 22 RPPPPPSKSPSYINPSVPDIFIELCIGRRSPAPRLSTTLPLAC 64
>10_08_0789 + 20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 447 NPNIDVTIDGADEVDSNMTLIKGGGGCLLQE--KIIASCSKKLIVIADYTKDSVKLG 611
NP V A++ ++ L+ GGGGC + + +C+ + ++ Y K +LG
Sbjct: 963 NPEKPVLTPTANQPSAHCVLVIGGGGCPSDSTAEPVLACNMQFMIQNSYGKGFGELG 1019
>09_06_0034 + 20370672-20371109,20371120-20371515
Length = 277
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -3
Query: 538 SCNRHPPPPLISVMFESTSSAPSIVTSIFGFVSSSP 431
S HPPPP F TSS P+ F F SS P
Sbjct: 226 SSQHHPPPPHAGAGF--TSSEPAADHQSFNFHSSWP 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,596
Number of Sequences: 37544
Number of extensions: 251970
Number of successful extensions: 765
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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