Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_M02
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 29 0.59
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac... 29 0.77
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 4.1
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 4.1
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 26 5.5
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 25 7.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.5
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 25 9.5
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.59
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 586 WFNCKTELCSLYRRITSWLRH 648
+FNC L S Y R +SWL H
Sbjct: 337 YFNCNDRLRSFYYRFSSWLFH 357
>SPAC16C9.02c |||S-methyl-5-thioadenosine
phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 28.7 bits (61), Expect = 0.77
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 444 LGRQDGVKQEWLIEXTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQ 593
L R+ + + + T + WR N EP + HI+ K++ ++FL++
Sbjct: 206 LAREAEIAYQMVCMATDYDCWRMNEEPVTVETVMEHISNNKDNAKIFLLE 255
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 114 LQHQISQNPSMNLTLNRSI-NLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMR 290
+ H++S + L++ SI N+ P F KEP F+K V + +E + +
Sbjct: 939 ISHRVSPKQFLELSVRPSILNMEP-----FSMKEPQFKKGDEVTGFVNNVSKECVWVSLT 993
Query: 291 RSVEG 305
SV G
Sbjct: 994 PSVNG 998
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 580 YSWFNCKTELCSLYRRITSWLRH 648
Y WF +CS+ IT WL H
Sbjct: 218 YEWFFVLHHMCSIGFLITIWLHH 240
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 108 PGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARF-QRMREEFCKIG 284
P L+ + P+ + NRS+ + ++YT + ++E + PAR + +EF ++
Sbjct: 77 PMLRGENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYECEGDYPARTGNEIIDEFDQLN 136
Query: 285 MRRSVEG 305
++ S G
Sbjct: 137 LQCSACG 143
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 120 HQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIG 284
H IS + ++ + R+ L L+ + PLF++D S ++ E+ C IG
Sbjct: 389 HHISGS-AVRMAEERNTTLDKLSVSDLQSLHPLFDEDVSKVFNYEESVEKRCSIG 442
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 9.5
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 3 SLSIISA--YA-VLLKIRSNIRWQQFKGLPANKQWPARPGLQHQISQNPSMNLTLNRSIN 173
S+SI S YA ++ I+ ++ QQ++ LP N QH Q L+ N+ I
Sbjct: 91 SVSIASQPHYAEAIVPIQQVLQPQQYRQLPPNMVAATNAPQQHPQLQRMMPILSSNQPIQ 150
Query: 174 LYPLTN 191
PL N
Sbjct: 151 QLPLPN 156
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 17 LCIRGFVENKIKYKMAAVQGPPG*QTVACATRTTTS 124
LCI GFV N++ + P QT++ ++ TS
Sbjct: 324 LCIAGFVVNELYTTRTRIIAPSAFQTLSLSSVMVTS 359
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 322 NMVSLMCCYCNSALRFSSCP 381
N + L CYC ++ S+CP
Sbjct: 185 NRILLESCYCENSTGMSTCP 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,194
Number of Sequences: 5004
Number of extensions: 54093
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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