Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_M02
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43830| Best HMM Match : NUDIX (HMM E-Value=2.8e-09)                 31   0.82 
SB_27016| Best HMM Match : NUDIX (HMM E-Value=1.4e-16)                 31   0.82 
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.9  
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)                 28   7.6  
SB_11303| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_43830| Best HMM Match : NUDIX (HMM E-Value=2.8e-09)
          Length = 416

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 375 LPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEXTIGNWWRPNF 518
           LP G L   E  + G KR + E  G +        I+   GNW R  F
Sbjct: 338 LPAGRLEKNESLVQGAKREVIEETGLEFEPSTMICIDTVFGNWIRVTF 385


>SB_27016| Best HMM Match : NUDIX (HMM E-Value=1.4e-16)
          Length = 454

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 375 LPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEXTIGNWWRPNF 518
           LP G L   E  + G KR + E  G +        I+   GNW R  F
Sbjct: 212 LPAGRLEKNESLVQGAKREVIEETGLEFEPSTMICIDTVFGNWIRVTF 259


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 513 NFEPPQYPYIPPHITKPKEHKRLFLVQLQ 599
           NF PPQ  YIPP    PK  + LF+  L+
Sbjct: 218 NFTPPQQEYIPPE-EDPKATRTLFVGNLE 245


>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
          Length = 2658

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 465  KQEWLIEXTIGNW-WRPNFEPPQYPYIPPHITKPKEHKRLFLVQL 596
            K  +L++  + N  WRP+F   ++P IP     P + K LFL+++
Sbjct: 2054 KDLFLLQMPLANESWRPDFSKIKFPEIPK--KTPVDAKDLFLLRM 2096


>SB_11303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
 Frame = +3

Query: 117  QHQISQNPSMNLTLNRSINLY-----PLTNYTF-GTKEPLFEKDASVPARFQRMREEFCK 278
            ++ + +NP M+L+   +  +      PL   TF GT + L      + A F  +R+E   
Sbjct: 860  KNDVIKNPEMDLSEAAAAAIIDPVASPLLAKTFRGTPQTLL-----ITAEFDPLRDEGFL 914

Query: 279  IGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGE---LNPGEDEIDGLKRLLT 437
               R  + GV LVH+H       L L +  F  P       N   D ID L+RL T
Sbjct: 915  YAERIKLAGVELVHKHYFSFHGFLTLTSEPFPHPFSTEEGRNGTRDVIDFLQRLKT 970


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,454,870
Number of Sequences: 59808
Number of extensions: 420296
Number of successful extensions: 1184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)